PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g27800.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 721aa    MW: 82697 Da    PI: 7.5466
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g27800.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.73.9e-13861621488
              FAR1  14 vrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       v++s+ k+s+ ++   +++f C+ e +++e++ k    +++r+ ++  +t+Cka+++v k+  +kw+vt ++l+HnH+
  LOC_Os07g27800.1  86 VKVSSCKRSNVTKDYNRYEFACYSERTSKEQNAKssiGSRSRKCNSIRKTDCKARMVVVKR-AEKWVVTIVDLDHNHP 162
                       6788899999999*************9999988878888999999**************99.9**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1186162IPR004330FAR1 DNA binding domain
PfamPF105514.4E-34286380IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MEAETSVNEQ ATSVGEKDID AEVLRAALLK AGIVAGPTSI LQVDAGDGLE IEPATTTEGS  60
EMEGVQSQPV VPFVGMEFFS DKEARVKVSS CKRSNVTKDY NRYEFACYSE RTSKEQNAKS  120
SIGSRSRKCN SIRKTDCKAR MVVVKRAEKW VVTIVDLDHN HPPLSPNSLR FLESHRNVSD  180
EDYELIELRH NNNIPTRRIM SVLSDLYGTM RNIPFTKKDV SNLRTSMRKR TTANGDMAET  240
IKYFQELQAE DPSFFYSMEL DSDNTVGSLF WVDGASKEAY KKFGDCIVFD TTYCTNKYNL  300
PFAPIIGVSN HGQTVLFGCV FLKNEKVETF EWVFETFLKA MDGKEPQCIM TDQDKTMEIA  360
IAKVLPRTIH RRCMWHVHRN ASTNLGVLLN GKEGFETDLK SCIDNSLNEE EFDASWDAMI  420
DRHELCGNKY MQHLYDNRKK WVPCFFMDYF FPFMSTSQRS ESMNKLFKDF VHPADSIRNF  480
IFQYEKLAQS CLDRDDNQRF ITVQTDPKMW SGYPMEEQDS KFYTRAMFEE FQEMLYRATK  540
YKTINGPEPG SYFVQLILDD DNKKFLVHYD INNETYSCAC KKFQRDKIAV RQAVKRKSQV  600
IAASSKKKKL DDTSCLDCDD PTRWGHRILD FEKAKSKVEV TVSGEVRYQA HYTKCKLPRR  660
ARSSCSLRRR RWCSGRSSAS LPLPTRTTSA NLVVGIPMAV PSFASDYTID LFVPLVEFVI  720
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216229KKDVSNLRTSMRKR
2594608KRKSQVIAASSKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.509180.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g27800.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g27800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052560.0AP005256.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0038F09.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639432.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLC7J4Q40.0C7J4Q4_ORYSJ; Os07g0461700 protein
STRINGOB10G16030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-95FAR1-related sequence 5