PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g27770.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 645aa    MW: 73977.9 Da    PI: 5.3038
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g27770.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.44.6e-131372131488
              FAR1  14 vrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       v++s+ k+s+ ++   +++f C+ e +++e++ k    +++r+ ++  +t+Cka+++v k+  +kw+vt ++l+HnH+
  LOC_Os07g27770.1 137 VKVSSCKRSNVTKDYNRYEFACYSERTSKEQNAKssiGSRSRKCNSIRKTDCKARMVVVKR-AEKWVVTIVDLDHNHP 213
                       6788899999999*************9999988878888999999**************99.9**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-11137213IPR004330FAR1 DNA binding domain
PfamPF105515.5E-34337431IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MSRLQVWVRD AEVLRTALLE AGIVTGPTSI LQVDAGDGFE IEPVNRTGGS EMEAETSVNE  60
QATSVGEKDI DAEVLRAALL KAGIVAGPTS ILQVDAGDGL EIEPATTTEG SEMEGVQSQP  120
VVPFVGMEFF SDKEARVKVS SCKRSNVTKD YNRYEFACYS ERTSKEQNAK SSIGSRSRKC  180
NSIRKTDCKA RMVVVKRAEK WVVTIVDLDH NHPPLSPNSL RFLESHRNVS DEDYELIELL  240
HNNNIPTRRI MSVLSDLYGT MRNIPFTKKD VSNLRTSMRK RTTANGDMAE TIKYFQELQA  300
EDPSFFYSME LDSDNTVGSL FWVDGASKEA YKKFGDCIVF DTTYCTNKYN LPFAPIIGVS  360
NHGQTVLFGC VFLKNEKIET FEWVFETFLK AMDGKEPQCI MTDQDKTMEI AIAKVLPRTI  420
HRRCMWHVHR NASTNLGVLL NGKEGFETDL KSCIDNSLNE EEFDASWDAM IDRHELCGNK  480
YMQHLYDNRK KWVPCFFMDY FFPFMSTSQR SESMNKLFKD FVHPADLIRN FIFQYEKLAQ  540
SCLDRDDNQR FITVQTDPKM WSGYPMEEQD SKFYTRAMFE EFQEMLYRAT KYKTINGPEP  600
GSYFVQLILD DDNKKFLVHY DINNEIYSCA CKKFQRDKIL KIYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267280KKDVSNLRTSMRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.509180.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g27770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g27770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052560.0AP005256.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0038F09.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639432.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLC7J4Q40.0C7J4Q4_ORYSJ; Os07g0461700 protein
STRINGOB10G16030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-95FAR1-related sequence 5