PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g27670.1 | ||||||||
Common Name | P0038F09.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 261aa MW: 28436.6 Da PI: 4.5407 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82.6 | 4.1e-26 | 86 | 143 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 dD y WrKYGqK++ g++f+rsYYrC++ gC+++k+v++s++dp+ +eitY g H++ LOC_Os07g27670.1 86 DDSYPWRKYGQKDILGARFARSYYRCAQMlGCTARKQVQQSDDDPSRLEITYIGLHTC 143 8**************************999**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 19.6 | 80 | 141 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.1E-23 | 80 | 144 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-24 | 84 | 143 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-33 | 85 | 145 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-24 | 86 | 143 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MTYLEFLQKN QWGQEASVGA DGVQVDDVCA GSLGGHATAG VWPGRWREIG GRACAWTAAE 60 GLENGGQESR ADGSSRRIIL ELGDRDDSYP WRKYGQKDIL GARFARSYYR CAQMLGCTAR 120 KQVQQSDDDP SRLEITYIGL HTCGGDRPSS PAPTNPADGP RCDAATSSHR LLPSALQQKL 180 EEHVPAASDD MMMACTPSWL FIPSPACSQS ELLSEGEVPE LRVVRQEPYD PVELVEEHKK 240 PSDADEDSLA LHNSVVPDFM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-16 | 84 | 154 | 15 | 80 | Disease resistance protein RRS1 |
5w3x_D | 7e-16 | 84 | 154 | 15 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.99019 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297725648 | 0.0 | ||||
Expression Atlas | Q6Z3B1 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g27670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g27670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005256 | 0.0 | AP005256.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0038F09. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645532.1 | 0.0 | uncharacterized protein LOC107278742 isoform X1 | ||||
TrEMBL | Q6Z3B1 | 0.0 | Q6Z3B1_ORYSJ; Uncharacterized protein P0038F09.20 | ||||
STRING | ONIVA07G11310.1 | 1e-138 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14186 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 2e-20 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g27670.1 |