PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g27340.1
Common NameLOC107275504, Os07g0457100, OsJ_24127, OSJNBa0027N13.125, OSNPB_070457100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 638aa    MW: 68294.2 Da    PI: 3.9196
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g27340.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.12.4e-2581471128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dk 90 
                       lppG+rF+P d+elv++yL +++++++++l+ vi+e+d + + Pw L + +  + +e +fF++++ k+ +gkr++r +   g+W+ +    d 
  LOC_Os07g27340.1   8 LPPGVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGAPPWMLLADHGRGGDEAFFFAEARAKNVKGKRQKRtVEGGGFWQGQRVcvDG 100
                       79****************************99***************877777889********************555599**966542344 PP

               NAM  91 evlsk.....kgel........vglkktLvfykgrapkgektdWvmheyrl 128
                       e ls      +            + k +L f+ ++ ++g ++ Wvmhey++
  LOC_Os07g27340.1 101 ERLSVpggdgG--GevgggleiEWRKYMLSFF-AEGERG-SSGWVMHEYAI 147
                       44443566651..0445666647777888899.455554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-294166IPR003441NAC domain
PROSITE profilePS5100527.598166IPR003441NAC domain
PfamPF023651.1E-159146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MAAAADGLPP GVRFDPADDE LVSRYLLRRL RKQPIPLHGV IHEADPLGAP PWMLLADHGR  60
GGDEAFFFAE ARAKNVKGKR QKRTVEGGGF WQGQRVCVDG ERLSVPGGDG GGEVGGGLEI  120
EWRKYMLSFF AEGERGSSGW VMHEYAITAP DDLASWPIRL YRVRFSGHGK KRKREPERLG  180
ARVHDDDVDG GQRAAPRRAV TETALFVQPS AVDCAESAGQ SFSGAIEPVF HDLPDMMPEQ  240
ADAGDTTETT AAVVNLTDAM SEQPVLPLAA DGDDQSSYGV IDPAFRDLAD LIVLPPEPDD  300
GGMERATPCT PMSETALFEQ QGPPGNADCA DHQSSYGVID PAFCEQADAG EAETTVSAAV  360
VNQNYSMALC DFNFPEVLSY VDFTAGMEPS WQQRWPPMSE SAPFEQQEPP LAPVAMVDLP  420
PGNADCADHQ SCSGVIDPAF RDLPDMTVLP PEQADTGGGA ETTTAMVSLT DKLKYSSSMD  480
GEAAQAWCDF DFPESTDEAL SYIDFTAGAH TDNDGGVSET AMFEQLGSPP QHDPLPMDAD  540
GADQSSSGPL IDTVFRDHAE PIVLPLEQAD TGGGAAAAVN LMDKQKYSSS MDGEAVPAWC  600
DSDFPESIDE VLSYIDVSTD DTSCIDFSMD DLFDLAD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.540170.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329865100.0
Expression AtlasQ84YR4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g27340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g27340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056410.0AP005641.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645973.10.0uncharacterized protein LOC107275504
TrEMBLQ84YR40.0Q84YR4_ORYSJ; Os07g0457100 protein
STRINGORUFI07G13350.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15243914
Representative plantOGRP9888212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.25e-12NAC domain containing protein 41