PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g27330.1
Common NameLOC4343147, Os07g0456900, OsJ_24126, OSJNBa0027N13.123, OSNPB_070456900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 777aa    MW: 82292.6 Da    PI: 3.8532
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g27330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.34.2e-2581471128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dk 90 
                       lppG+rF+P d+elv++yL +++++++++l+ vi+e+d + + Pw L +++  + +e +fF++++ k+ +gkr++r +   g+W+ +    d 
  LOC_Os07g27330.1   8 LPPGVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGAPPWMLLAAHGRGGDEAFFFAEARAKNVRGKRQKRtVEGGGFWQGQRVciDG 100
                       79****************************99***************867677888********************555599**966542333 PP

               NAM  91 evlsk.......kgel......vglkktLvfykgrapkgektdWvmheyrl 128
                       e l+        +  +       + k +L f+ ++ ++g ++ Wvmhey++
  LOC_Os07g27330.1 101 ERLRVpgdggggE--VggeleiEWRKYMLSFF-AEGERG-SSGWVMHEYAI 147
                       3333356666540..15555647778888999.455554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-294166IPR003441NAC domain
PROSITE profilePS5100527.6818166IPR003441NAC domain
PfamPF023651.9E-159146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MAAAADGLPP GVRFDPADDE LVSRYLLRRL RKQPIPLHGV IHEADPLGAP PWMLLAAHGR  60
GGDEAFFFAE ARAKNVRGKR QKRTVEGGGF WQGQRVCIDG ERLRVPGDGG GGEVGGELEI  120
EWRKYMLSFF AEGERGSSGW VMHEYAITAP ADLASSPIRL YRVRFSGHGK KRKREPERLG  180
ARVHDDDVDG GERAAPRRAV AETALFVQQS SAVDCAESAD QSFSGVIEPV FHDLPDMMPE  240
QADAGDTAET TAAVVNLTDA MTEQPVLPLA ADGDDQSSYG VIDPAFRDLA DLMVLPPVLA  300
QQEPPLAPVA MVDLPPGNAD CADHQSCSGV IDPAFRDLPD MTVLPPEQAD TGGGAETTTA  360
MVSLTDKLKY SSSMDGEAAP AWCDFDFPES TDEVLSYMNF TAGAHDNNDG SVGRAAPWRP  420
VSEIAMFEQP SAVDLPPGDA DCTESADQSF SGVIEPVFHD LPDMIREQAD AGDTAETTAA  480
VVNQNYSMAL CDFDSGIDFT AGAHDSGMER ATPWTPMSEA ALFEQQGPPL APAAVVDLPP  540
GNADCADHQS SYGDMIVLPS EQAGAGGGAE TTEALFDQPV PPLAADCANQ GSYGVIDPVF  600
RDLADLIVLP PEQADAMDGE AAPAWCDFDF PENIDEALSY VDFTAGAHAD NDGGVSETAM  660
FEQPGSPPQH DPLLMDADGA DQSSSSGALI DTVFGDHAEP IVLPLEQADT GGGAAAAVKL  720
MDKQKYSSSS MDGEEAPAWC DSDFPESIDE VLSYVDFSTD GASCDFSMDE LFDLAD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.540170.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329865100.0
Expression AtlasQ84YR6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g27330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g27330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013010.0AK101301.1 Oryza sativa Japonica Group cDNA clone:J033033K06, full insert sequence.
GenBankAP0056410.0AP005641.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646406.10.0uncharacterized protein LOC4343147
TrEMBLQ84YR60.0Q84YR6_ORYSJ; Os07g0456900 protein
STRINGOS07T0456900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15243914
Representative plantOGRP9888212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-12NAC domain containing protein 83