PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g25370.1 | ||||||||
Common Name | LOC107275464, Os07g0434300, OSNPB_070434300, P0673E01.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 193aa MW: 22123.4 Da PI: 10.9082 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 23 | 67 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l ++ k+ G ++W+++ar m+ +R++ +c++rw+ +l LOC_Os07g25370.1 23 AWTPEEDARLQRLAKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 67 7*****************************.***********9886 PP | |||||||
2 | Myb_DNA-binding | 23.3 | 1.5e-07 | 75 | 118 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ +d+ l++++ +lG + Wk I r + gRt k+rw+ ++ LOC_Os07g25370.1 75 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRIMKHRWRELR 118 79****************99.********9.***********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.084 | 16 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-13 | 20 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.51E-23 | 21 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-14 | 23 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.03E-13 | 23 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 23 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.364 | 68 | 118 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0016 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-5 | 75 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.90E-4 | 75 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-8 | 80 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MATPPLPPPP RARCVVRLKL PPAWTPEEDA RLQRLAKENG FRRWSRVARS MPRRSARSCR 60 DRWRHHLARD VYHRPFTARD DDELLRLHYR LGDRWKEIGR AVYGRTSRIM KHRWRELRRS 120 GFPLAATARK VQALDMVESE VEESDQSLPP PELQRSLADA LASSFGYCSL ANEHAMDPLA 180 GSLSLGFACM AV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-17 | 24 | 114 | 7 | 97 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-16 | 24 | 119 | 61 | 156 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-16 | 24 | 119 | 61 | 156 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-17 | 24 | 119 | 7 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 2e-17 | 24 | 119 | 7 | 102 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297610325 | 4e-85 | ||||
Expression Atlas | Q6Z3W3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g25370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g25370 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005200 | 0.0 | AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645964.1 | 1e-137 | transcription factor MYB73 | ||||
TrEMBL | Q6Z3W3 | 1e-136 | Q6Z3W3_ORYSJ; Myb-like transcription factor-like | ||||
STRING | OS07T0434300-00 | 1e-137 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 | Representative plant | OGRP10428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 6e-19 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g25370.1 |
Entrez Gene | 107275464 |