PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os07g25150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 69aa MW: 7681.86 Da PI: 9.9016 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 2e-08 | 2 | 38 | 12 | 48 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 l+ +++++G g+W++++ g R+ k+c +rw +yl LOC_Os07g25150.1 2 LASYIQEHGAGNWRAVPTNTGVMRCSKSCPLRWTNYL 38 7899*******************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 3.31E-4 | 1 | 38 | No hit | No description |
SuperFamily | SSF46689 | 1.79E-15 | 1 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.007 | 1 | 42 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-12 | 2 | 41 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-7 | 2 | 38 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-7 | 42 | 65 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 69 aa Download sequence Send to blast |
MLASYIQEHG AGNWRAVPTN TGVMRCSKSC PLRWTNYLQP GIKRGNFTEQ EEKLIVHLQA 60 LLGNRSLP* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.78901 | 1e-114 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32973474 | 1e-114 | ||||
Expression Atlas | B7E8L8 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in 2-week-old seedlings, in the early stages of development. {ECO:0000269|PubMed:10571865}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vascular tissues of leaves, hypocotyl and roots. {ECO:0000269|PubMed:24587042}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to the DNA sequence 5'-AACAAAC-3' (PubMed:19170933). Acts as a positive regulator of hypersensitive cell death (PubMed:10571865, PubMed:12119395). Acts as a positive regulator of salicylic acid synthesis (PubMed:16730712). Regulates very-long-chain fatty acid biosynthesis (PubMed:18326828). Acts cooperatively with BZR2 to promote expression of a subset of brassinosteroids target genes (PubMed:19170933). Transcriptional activity and hypersensitive response control negatively regulated by PLA2-ALPHA and by the Xanthomonas type III effector XopD (AC G9L9K6) (PubMed:20696912, PubMed:21917550). Involved in the regulation of abscisic acid (ABA) signaling (PubMed:22814374). Increased levels of MYB30 can accelerate flowering both in long and short days through the regulation of FT (PubMed:24587042). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:12119395, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:18326828, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912, ECO:0000269|PubMed:21917550, ECO:0000269|PubMed:22814374, ECO:0000269|PubMed:24587042}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os07g25150.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated during hypersensitive response, but no expression detected during compatible interaction with pathogens (PubMed:10571865). Specifically induced in the inoculated zone 4 hours post pathogen infection (PubMed:20696912). Up-regulated by jasmonic acid and salicylic acid (PubMed:16463103, PubMed:16730712). Transcriptionally regulated by BZR2 (PubMed:19170933). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os07g25150 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK063456 | 1e-112 | AK063456.1 Oryza sativa Japonica Group cDNA clone:001-115-G07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647825.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647826.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647827.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647828.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647829.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647830.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647831.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647832.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647833.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647834.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647835.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647836.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647837.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647838.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647840.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_025882556.1 | 3e-42 | transcription factor MYB101 isoform X1 | ||||
Swissprot | Q9SCU7 | 2e-35 | MYB30_ARATH; Transcription factor MYB30 | ||||
TrEMBL | B7E8L8 | 6e-44 | B7E8L8_ORYSJ; cDNA clone:001-115-G07, full insert sequence | ||||
TrEMBL | Q0D6W4 | 7e-43 | Q0D6W4_ORYSJ; Os07g0432800 protein (Fragment) | ||||
STRING | OS07T0484700-01 | 1e-41 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP40475 | 2 | 3 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28910.1 | 7e-38 | myb domain protein 30 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os07g25150.1 |