PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g24350.1 | ||||||||
Common Name | OSJNBa0052I14.29, P0409D09.43 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HB-other | ||||||||
Protein Properties | Length: 126aa MW: 14391.9 Da PI: 6.5142 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.8 | 1.4e-21 | 56 | 107 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le++Fe++ y+ ++r +LAkklg++erqVk+WFqNrR+++k LOC_Os07g24350.1 56 KRHTDDQIKHLESVFERCTYLGGNQRVQLAKKLGMEERQVKFWFQNRRTRKK 107 579***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-21 | 41 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.633 | 49 | 109 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.95E-19 | 50 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.1E-16 | 51 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-17 | 53 | 107 | No hit | No description |
Pfam | PF00046 | 6.2E-19 | 56 | 107 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.2E-6 | 80 | 89 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.2E-6 | 89 | 105 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MDNGSQQESS DLHVHHLPIA SIIGVEDRTE EADDAAVDYH DDSSEGQDEV SNKRMKRHTD 60 DQIKHLESVF ERCTYLGGNQ RVQLAKKLGM EERQVKFWFQ NRRTRKKVAT WVDKIQLSVR 120 NGGSP* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6ZF11 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g24350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g24350 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004298 | 1e-109 | AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09. | |||
GenBank | AP005690 | 1e-109 | AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14. | |||
GenBank | AP014963 | 1e-109 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828617.1 | 1e-16 | homeobox-leucine zipper protein ROC8-like | ||||
TrEMBL | Q6ZF11 | 2e-88 | Q6ZF11_ORYSJ; Uncharacterized protein | ||||
STRING | ORGLA07G0102900.1 | 1e-84 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14930 | 16 | 19 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17920.1 | 3e-17 | homeodomain GLABROUS 12 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g24350.1 |