PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os07g18840.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 1030aa MW: 120047 Da PI: 7.0397

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os07g18840.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.9	2.9e-12	264	338	1	66
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkakl 66 +++n+Y +++GFs+++ +s ++ krn+e+++ tf+C+k+ k++ ++k ++ er+t+++ t+Ck+ + LOC_Os07g18840.1 264 NYFNFYTYMAGFSIVNVHSARTtskKRNREVIRVTFKCYKYVKADCNTKPetvdetATGERKTNEVIGTECKCVM 338 59************99998888899**************9999899999889999**********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-11	264	339	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.1E-34	461	553	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.398	746	782	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-6	746	781	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-7	757	784	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1030 aa Download sequence Send to blast
MKQLAGNSKN FSETEAKLDK TKNSEADIGC SALNESEKSI IENNDKGTIS CMNMQEINSE 60 NGANNAKVDY ENNVLSLLDQ DYIADSFISY TSLMEHIISS QPKRCNELKV EGTQNDKIKT 120 GIGQDYQKVD ESLNSHVEYQ SEQRCSMDIL NLQESVQDKS LEQTSEIGYS NVDNQSQHAW 180 SLDIFNLQES VQEPILEQSS DIGNINGNGV DDAVMNDELL TEEDIEQFLE EEQQEALKGN 240 NANIDRKYIP ELDQKFKSII EAQNYFNFYT YMAGFSIVNV HSARTTSKKR NREVIRVTFK 300 CYKYVKADCN TKPETVDETA TGERKTNEVI GTECKCVMLS PPDEVRFLRS HKYLSTEEWV 360 LIRTLKECHI PTRNMIVILS VLRGGLTSLP YTKKDISNVR TEINRETSSN DMIQCLTYLK 420 KKQEENPNFF YEFDLDENRK VRNFFWTDGR SRDWYHKFGD CISFDTTFLT NRYNLPFAPF 480 VGVSGHGNTI LFGCAFLHDE TTETFEWLFT TFLKCMNGKQ PKTIITDQDG AMRAAIKNIF 540 REAKHRNCFF HIISKALKRS GSLFKKRQGL YAIYSDIIHN CLTEEEFEVL WQDMIQEFNL 600 QEINFLAHMW HIRKRFIPVY FKIDLCPFIQ STALSEGTNS RFKKNVGPQY SIRSFLTEYE 660 RVMDTIQNLE QHDHHESRTK RPTSFWSNYS IEYQAVKLYN NKIFKRFQAQ LRKTFELQVE 720 EIEKFKCYAV FEAENVISKQ IRKRKYLVMM DLDTEEYTCI CAMFQKDGIL CSHILKIMLH 780 LSIKEIPEKY IMHRWRKNHK STEIIKGKEI IPVSESSVLR FNILSRKFAE IASKGAKTVK 840 AYKFLMEESE KIDEKLNTMF SHEFEGADKQ QGHEENNSFS PTAEVNEKSE NTHIHGDIRN 900 EEDYIEDPDI ANSKGRPKQR YKTIREQIED KETNHCSHCG RTEHTFPTCP FKHIEFDLAR 960 KRKRKIPSKP QKSGEEEKKE ATSKKRKPNK KENTEIGKSH QDEVQQLSKR VKKKSEINTS 1020 KSCVMKRKE*

Sequence ? help Back to Top

Protein Sequence Length: 1030 aa Download sequence Send to blast

MKQLAGNSKN FSETEAKLDK TKNSEADIGC SALNESEKSI IENNDKGTIS CMNMQEINSE  60
NGANNAKVDY ENNVLSLLDQ DYIADSFISY TSLMEHIISS QPKRCNELKV EGTQNDKIKT  120
GIGQDYQKVD ESLNSHVEYQ SEQRCSMDIL NLQESVQDKS LEQTSEIGYS NVDNQSQHAW  180
SLDIFNLQES VQEPILEQSS DIGNINGNGV DDAVMNDELL TEEDIEQFLE EEQQEALKGN  240
NANIDRKYIP ELDQKFKSII EAQNYFNFYT YMAGFSIVNV HSARTTSKKR NREVIRVTFK  300
CYKYVKADCN TKPETVDETA TGERKTNEVI GTECKCVMLS PPDEVRFLRS HKYLSTEEWV  360
LIRTLKECHI PTRNMIVILS VLRGGLTSLP YTKKDISNVR TEINRETSSN DMIQCLTYLK  420
KKQEENPNFF YEFDLDENRK VRNFFWTDGR SRDWYHKFGD CISFDTTFLT NRYNLPFAPF  480
VGVSGHGNTI LFGCAFLHDE TTETFEWLFT TFLKCMNGKQ PKTIITDQDG AMRAAIKNIF  540
REAKHRNCFF HIISKALKRS GSLFKKRQGL YAIYSDIIHN CLTEEEFEVL WQDMIQEFNL  600
QEINFLAHMW HIRKRFIPVY FKIDLCPFIQ STALSEGTNS RFKKNVGPQY SIRSFLTEYE  660
RVMDTIQNLE QHDHHESRTK RPTSFWSNYS IEYQAVKLYN NKIFKRFQAQ LRKTFELQVE  720
EIEKFKCYAV FEAENVISKQ IRKRKYLVMM DLDTEEYTCI CAMFQKDGIL CSHILKIMLH  780
LSIKEIPEKY IMHRWRKNHK STEIIKGKEI IPVSESSVLR FNILSRKFAE IASKGAKTVK  840
AYKFLMEESE KIDEKLNTMF SHEFEGADKQ QGHEENNSFS PTAEVNEKSE NTHIHGDIRN  900
EEDYIEDPDI ANSKGRPKQR YKTIREQIED KETNHCSHCG RTEHTFPTCP FKHIEFDLAR  960
KRKRKIPSKP QKSGEEEKKE ATSKKRKPNK KENTEIGKSH QDEVQQLSKR VKKKSEINTS  1020
KSCVMKRKE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	959	964	RKRKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os07g18840.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os07g18840

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004398	0.0	AP004398.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0438G07.
GenBank	AP005674	0.0	AP005674.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1126F07.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	J3MVQ9	0.0	J3MVQ9_ORYBR; Uncharacterized protein
STRING	OB09G10870.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-72	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os07g18840.1