PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g17180.1 | ||||||||
Common Name | Os07g0272700, OsJ_23813, OSJNBb0002J01.26, OSJNBb0032G22.1, OSNPB_070272700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 606aa MW: 64333.4 Da PI: 3.7925 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.4 | 9.1e-26 | 11 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk...d 89 lppG+rF+Ptd elv+++L ++++gk+l+l+ vi e+d ++v Pw+L ++ +++ +e +fF++++ k+ +g+r++r + sg W+ + LOC_Os07g17180.1 11 LPPGLRFDPTDGELVSRFLLRRLQGKPLPLNGVILEADPLSVPPWKLLAE-HGRGDEGFFFAEARAKNGKGSRQKRtVEGSGLWQGQRVcadG 102 79****************************99***************744.4567799******************55669***966542222 PP NAM 90 kevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++l+ + e v+ k L f+ ++ ++g ++ Wvmhey++ LOC_Os07g17180.1 103 EKLLVPdgggvEVEIVWRKYLLSFF-AEGERG-SSGWVMHEYAV 144 2333335555444559999999999.444554.89*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-32 | 8 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.625 | 11 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-15 | 12 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000032 | anatomy | tetrad of microspores | ||||
PO:0001029 | developmental stage | E tetrad stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 606 aa Download sequence Send to blast |
MAAGGGGADG LPPGLRFDPT DGELVSRFLL RRLQGKPLPL NGVILEADPL SVPPWKLLAE 60 HGRGDEGFFF AEARAKNGKG SRQKRTVEGS GLWQGQRVCA DGEKLLVPDG GGVEVEIVWR 120 KYLLSFFAEG ERGSSGWVMH EYAVTSPAEL AASPIRLYRV RFSGHGKKRK REPQSGEDGV 180 GRARAAPQSA GTETALLEER VMPPQPAPQS VGTEDALVEE RIPPPQPVPI PPIAGTEDAL 240 DVGTEDVRGR AAPQSAGTES ALLEECVLPP QTAPQITGTG VALLDEVVPP PQTVSISPPA 300 ALVDAVDDAD CANQGCSGVM DDSTMVFSHL PDMITLPAEE GDAAGGAALA SMDYSWADFE 360 FPEINMDELP NCIDFTTTDP SCLDIELSMG DLHEPQSTGI ESDLLEEFVP QPQPVLVPPL 420 AALVEVADSS EGPDQGCSVV MHDSSAVFTH LSDPIVLPEE EEADRPDAPA GTMSLDYQNY 480 SLSDFEFPEY PLLDVAGDAD GADQCSSNVM DDSSMVFSHL EDLITLPAEE AEADACSAAP 540 APSLDNQKYS SQGIIDSEAP ALSDFEFPET IDEVLNSINF TMADPSCLDM EFSMDDLLDF 600 DPPAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-12 | 11 | 142 | 15 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6Z4J4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g17180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g17180 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005172 | 0.0 | AP005172.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0002J01. | |||
GenBank | AP005880 | 0.0 | AP005880.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0032G22. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q6Z4J4 | 0.0 | Q6Z4J4_ORYSJ; Os07g0272700 protein | ||||
STRING | OS07T0272700-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 | Representative plant | OGRP9888 | 2 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 2e-13 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g17180.1 |