PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g17160.1 | ||||||||
Common Name | Os07g0272500, OSNPB_070272500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | EIL | ||||||||
Protein Properties | Length: 466aa MW: 50264.2 Da PI: 8.3602 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 45 | 2.6e-14 | 90 | 226 | 129 | 265 |
.XX----STTS-HHHHHHHHHHHSSSSSS-TTS--T..TT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGG CS EIN3 129 rsseshslselqDTtlgSLLsalmqhcdppqrrfpl..ekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsp 219 rss +s l D l + + lm+ c ppq +pl + + pPWWPtG+e+ww+elg+ + ppy+ l ka k a +k + p LOC_Os07g17160.1 90 RSSLAMAVSGLADHVLERMVKVLMRKCHPPQALYPLigKSPLRPPWWPTGREQWWPELGAGA--VVPPYRPAPLLSKAEKEVAVVAMVKNLVP 180 5566667777888888888999*************95456799*************999764..4689**98899999986666788999*** PP GHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX CS EIN3 220 tieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss 265 ++e++ +r ++ ++++ e a+ + e++ + ++h LOC_Os07g17160.1 181 DFERLFMAVRMAPSVTSRITDAEARAWDDGVAGERETYMARHPHRT 226 ***************************9999999888888888743 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.3180.10 | 1.2E-38 | 89 | 224 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Pfam | PF04873 | 3.7E-17 | 94 | 209 | No hit | No description |
SuperFamily | SSF116768 | 2.22E-44 | 94 | 219 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MDASKKSVMT KEEQQLSPAA SPAAAVMTAE ADAINEEQDK AAAATTADHT APPPPPPAAA 60 AVADHAGEMD MASGSGVAHL APPAVAPAPR SSLAMAVSGL ADHVLERMVK VLMRKCHPPQ 120 ALYPLIGKSP LRPPWWPTGR EQWWPELGAG AVVPPYRPAP LLSKAEKEVA VVAMVKNLVP 180 DFERLFMAVR MAPSVTSRIT DAEARAWDDG VAGERETYMA RHPHRTTPTR AWKLMDSLKP 240 EAVRMKLKAP KPKPQVTIKV EDAAPFLTVS AAADPAAVEA AMGAIEAMRN SSKDPDAPYY 300 PMPSPLHGHN EVGPNDYPEN PAIWKEFNRK EGQLDLLRVG KKNDRMAISD RVDGGASGSG 360 PRKGYLVMKT YKKAQEYYRE LRNKGAMASG AGVKIEDDSE TESDNEDEKA NEKAKAKAKA 420 RAVYQQNKGV KTEDQSETES DNEDEQAKVM AKAKARVIPR PNKGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wij_A | 2e-15 | 95 | 207 | 10 | 121 | ETHYLENE-INSENSITIVE3-like 3 protein |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A0A0N7KN89 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g17160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g17160 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005172 | 0.0 | AP005172.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0002J01. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646400.2 | 0.0 | uncharacterized protein LOC107276281 | ||||
TrEMBL | A0A0E0Q6I9 | 0.0 | A0A0E0Q6I9_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0N7KN89 | 0.0 | A0A0N7KN89_ORYSJ; Os07g0272500 protein | ||||
TrEMBL | Q6Z4J6 | 0.0 | Q6Z4J6_ORYSJ; Uncharacterized protein OSJNBb0002J01.22 | ||||
STRING | ORUFI07G09930.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15970 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73730.1 | 2e-14 | ETHYLENE-INSENSITIVE3-like 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g17160.1 |