PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g16330.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 265aa    MW: 29803.4 Da    PI: 10.7094
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g16330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS25.91.2e-081702243688
              GRAS  36 dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevs 88 
                       +pm R++ayf++ALa r++r++++++++ +p+e +++   s++ ++al++++ ++
  LOC_Os07g16330.1 170 TPMPRVVAYFAKALALRVVRMWPHMFEISAPWELTDDAfnSDDDAMALRILNTIT 224
                       79********************************988788999999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.7E-6170224IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MRSPPPLHAD STPERRRGEE MCEMGRVEFL KAIKDVAPKA TSCGTRAPAR LCLRRGVQPY  60
VHQRQSTCRR CTPAAALLAD LSGSGKKRRE EKRRREEKKK KEKEKEKCRR QDAAEMWVPP  120
YTMSAKSGKI GSIVPRDPFC THRRGGRRGG QGEEGEAHCV RRDGFAGGPT PMPRVVAYFA  180
KALALRVVRM WPHMFEISAP WELTDDAFNS DDDAMALRIL NTITRAKTET SPGRAKAEEM  240
FVRERMCNGT VAAAGVRLPE RRLW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
186100KRREEKRRREEKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.891101e-51callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154661351e-51
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g16330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g16330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064650.0AP006465.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1059D01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2366044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-12GRAS family protein