PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g14110.1
Common NameOJ1058_C08.6, OJ1341_A08.140, OsJ_23687
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 330aa    MW: 35943.6 Da    PI: 9.3087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g14110.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-1794140148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT eEde l + v+ +G + W+ Ia+ ++ gR +kqc++rw ++l
  LOC_Os07g14110.1  94 KGGWTREEDEVLRQMVRHHGDRKWAEIAKSLP-GRIGKQCRERWTNHL 140
                       688*****************************.************996 PP
2Myb_DNA-binding56.75.4e-18146188145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +g WT+eEd +l++a++ +G++ W++Iar ++ gR+++ +k+rw+
  LOC_Os07g14110.1 146 KGIWTEEEDRKLIKAHQTYGNR-WSAIARSLP-GRSENTVKNRWN 188
                       678*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.58189144IPR017930Myb domain
SuperFamilySSF466898.3E-3191187IPR009057Homeodomain-like
SMARTSM007172.8E-1693142IPR001005SANT/Myb domain
PfamPF002499.8E-1694140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2596145IPR009057Homeodomain-like
CDDcd001672.64E-1697140No hitNo description
PROSITE profilePS5129418.567145195IPR017930Myb domain
SMARTSM007171.3E-17145193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-23146192IPR009057Homeodomain-like
PfamPF002492.1E-16146188IPR001005SANT/Myb domain
CDDcd001674.27E-15149191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MATDRMPDSH FMASSNGGAC YQNTHGTPIT MGVPNLGCLV ASIGIAPSSS LMPERGLATA  60
NYNLVANFPE DAAVVPQQQQ LQAASSNSNS GLIKGGWTRE EDEVLRQMVR HHGDRKWAEI  120
AKSLPGRIGK QCRERWTNHL HPDIKKGIWT EEEDRKLIKA HQTYGNRWSA IARSLPGRSE  180
NTVKNRWNAT KRSLNSKRRL RKKNNEQAVP RQPSLLEEYI RSCQHPLPNE TAPPASFDIG  240
GYGTGGTIGA SPTPPTVHAL GGSTPLGLVM FLDLLNQATP HPPQPDLNLL NITPVVPHLN  300
TSEYCLQLDA RGNCSMASCR CNPTGSAPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-385819225156MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-385819225156MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8H5Q3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g14110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g14110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037380.0AP003738.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1058_C08.
GenBankAP0037540.0AP003754.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1341_A08.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645903.11e-168transcription factor MYB119
TrEMBLQ8H5Q30.0Q8H5Q3_ORYSJ; Myb family transcription factor-like
STRINGOBART07G08680.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-44myb domain protein 98