PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g13920.1
Common NameOJ1341_A08.111, Os07g0242800, OSNPB_070242800, P0418E08.133
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 375aa    MW: 40338.6 Da    PI: 4.1254
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g13920.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.76.5e-2591481128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk...d 89 
                       lppG+rF+P+d+elv +yL ++++g++l+l+ v+ ++d ++++Pw+L + +  + +e +f ++++ k+a+gkr++r +   g+W+ +      
  LOC_Os07g13920.1   9 LPPGLRFDPSDDELVGRYLLRRLQGQPLPLDGVVLDADPLSAQPWRLLADHGRGGDEAFFLAEAHAKNAKGKRQKRtVEGGGFWQGQRMcvdG 101
                       79****************************999**************877777889********************555599**976653324 PP

               NAM  90 kevlsk..kgel..........vglkktLvfykgrapkgektdWvmheyrl 128
                       k++l+   +  +           + k +L f+ ++ ++g ++ Wvmhey++
  LOC_Os07g13920.1 102 KKLLVPggD--DgggggevleiAWRKYVLSFF-AEGERG-SSGWVMHEYSV 148
                       455554440..35556667887899999****.444454.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-313167IPR003441NAC domain
PROSITE profilePS5100528.6899167IPR003441NAC domain
PfamPF023655.5E-1610148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAAAGADGLP PGLRFDPSDD ELVGRYLLRR LQGQPLPLDG VVLDADPLSA QPWRLLADHG  60
RGGDEAFFLA EAHAKNAKGK RQKRTVEGGG FWQGQRMCVD GKKLLVPGGD DGGGGGEVLE  120
IAWRKYVLSF FAEGERGSSG WVMHEYSVTA PADLASSPLR LYRIRFSGYG KKRKREPEDD  180
GRAHGAPRRA EAETALFDLE VGPPPPPLLV PPPAAAAADH GTDQSSSGVT DMVFRDLPDL  240
IADAGAALPD QNQQDWSEVA DQSSFCVMGD DSSLLLPDLP GMIDDNEHQQ FVRECDMPHL  300
FVPQAEEAIA GGGAASAPSA DNQNCEFNDG EDMALSDFEF PESIDEVLSY IDFSTSDTSC  360
RDFTMDELFD LPVD*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8GRQ2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g13920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g13920
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037540.0AP003754.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1341_A08.
GenBankAP0043820.0AP004382.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0418E08.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882797.10.0NAC transcription factor 32
TrEMBLA0A0E0Q6330.0A0A0E0Q633_ORYRU; Uncharacterized protein
TrEMBLQ8GRQ20.0Q8GRQ2_ORYSJ; Os07g0242800 protein
STRINGORUFI07G08610.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Representative plantOGRP9888212