PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g12820.1 | ||||||||
Common Name | OsJ_23623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 26116.5 Da PI: 10.8798 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.8 | 1.4e-11 | 5 | 91 | 9 | 99 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-..EEEEEE-SS.SEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD..fvvFkldgr.sefelvvkvfrk 99 + +++ l +p +++ +k ++tl+l++ +g + +vk+ +++ ++t GWkeF ++ gLk g+ +vvF+ + s+ +l+v +f+k LOC_Os07g12820.1 5 KTASQDYLPIPVAVTKASRLK--HGRTLKLMTAHGLKIRVKV--AEARDKLYMTIGWKEFIQEAGLKMGEskSVVFR---TlSKSRLNVIIFNK 91 566778888999999888888..4569***************..***********************7763379999...44677779998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0035 | 1 | 92 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.265 | 1 | 92 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-9 | 3 | 91 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-15 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-13 | 8 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVKIKTASQD YLPIPVAVTK ASRLKHGRTL KLMTAHGLKI RVKVAEARDK LYMTIGWKEF 60 IQEAGLKMGE SKSVVFRTLS KSRLNVIIFN KEGYSRCPIP DKAAKALINN QSSSAPSFST 120 KSTAPRHPSF TNVEGRVHKT KSHKNEHIQL RFKHHTGSTS TANTKRIVKD MCCYNKRMKL 180 SSEVKNYVRD IAQFLDYSSK FYIVTMKNIH EVRQGGKIFH LQSIYSLEK* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | B9FWA4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g12820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g12820 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005774 | 0.0 | AP005774.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0086N05. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q84YL3 | 1e-134 | Y7282_ORYSJ; Putative B3 domain-containing protein LOC_Os07g12820 | ||||
TrEMBL | B9FWA4 | 1e-170 | B9FWA4_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI07G07980.1 | 1e-164 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18252 | 6 | 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g12820.1 |