PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os07g12510.1 | ||||||||
Common Name | LOC4342759, OSJNBa0016A21.102, OSJNBa0066H10.135 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 283aa MW: 30602.7 Da PI: 10.8225 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.3e-21 | 60 | 110 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +grW+AeIrdp+eng +r++lg+f+tae Aa+a++ a ++l+g LOC_Os07g12510.1 60 RFTGVRRRP-WGRWAAEIRDPKENG--RRVWLGTFDTAEAAAAAYDDACLRLRG 110 689******.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-28 | 60 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.709 | 60 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.69E-13 | 60 | 118 | No hit | No description |
SMART | SM00380 | 1.9E-29 | 60 | 124 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-14 | 60 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 61 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-21 | 61 | 119 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.1E-9 | 84 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR01217 | 5.3E-9 | 118 | 130 | No hit | No description |
PRINTS | PR01217 | 5.3E-9 | 131 | 152 | No hit | No description |
PRINTS | PR01217 | 5.3E-9 | 162 | 178 | No hit | No description |
PRINTS | PR01217 | 5.3E-9 | 180 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MAMEGEVEGG GRRRVVRIIF RDEDATDSSS SEEEGEGEVV AARRVVVKRT RLRCQEVERR 60 FTGVRRRPWG RWAAEIRDPK ENGRRVWLGT FDTAEAAAAA YDDACLRLRG PGAALNLPSR 120 RCVAPAPPPP PPPPPPTAEE KKLLLFPPPL PPRKKAMLFP LPLPPRKKPL LYPPPLPPKK 180 KPLPPPSPPP QPPLPEKENT PLPPLLLPPK KKPLPPPSPT AAAKEEPIEL EHAAPPPPFV 240 PRPVWPLLAS GGGGKRKKQS GCGGRIPALN TAAAAVEETG RA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-21 | 60 | 119 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.67653 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 117231819 | 0.0 | ||||
Expression Atlas | Q8H2L8 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os07g12510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os07g12510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005516 | 0.0 | AP005516.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0066H10. | |||
GenBank | AP005764 | 0.0 | AP005764.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645363.1 | 0.0 | formin-like protein 3 | ||||
TrEMBL | Q0D7P2 | 0.0 | Q0D7P2_ORYSJ; Os07g0227600 protein | ||||
TrEMBL | Q8H2L8 | 0.0 | Q8H2L8_ORYSJ; Pathogenesis-related genes transcriptional activator Pti6-like protein | ||||
STRING | OS07T0227600-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23648 | 3 | 3 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-15 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os07g12510.1 |
Entrez Gene | 4342759 |