PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g12130.1 | ||||||||
Common Name | LOC107281580, OsJ_23574, P0592C06.127 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 439aa MW: 47468 Da PI: 6.0743 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 108 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEde l + v+ +G + W+ Ia+ ++ gR +kqc++rw ++l LOC_Os07g12130.1 108 KGGWTREEDEVLRQMVRHHGDRKWAEIAKSLP-GRVGKQCRERWTNHL 154 688*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 162 | 202 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd l++a++ +G+ W++Ia+ ++ gR+++ +k++w+ LOC_Os07g12130.1 162 IWTEEEDRMLIEAHQTYGNS-WSAIAKQLP-GRSENTIKNHWN 202 6*****************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.56 | 103 | 158 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.73E-31 | 105 | 201 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-15 | 107 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 108 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 110 | 159 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.84E-15 | 111 | 154 | No hit | No description |
PROSITE profile | PS51294 | 17.468 | 159 | 209 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-17 | 159 | 207 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 160 | 206 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-15 | 163 | 202 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.00E-14 | 163 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MAAAGNSFLN QELVKVADGV SDWHLPSSSH GGTCHTNTRG APITVGVPDL GCPVSSIGMA 60 TSSSLMPKEG LTTASYNSVV AFPVGATMVP QQQQTQAAGS NDNPGLVKGG WTREEDEVLR 120 QMVRHHGDRK WAEIAKSLPG RVGKQCRERW TNHLHPDIKK DIWTEEEDRM LIEAHQTYGN 180 SWSAIAKQLP GRSENTIKNH WNATKRSLNS KRRLRKKNSE QTVPGQPSLL ESYIRSCQHM 240 LPSETVPPPP APFDISRYGN SGVIGASPTL PVVQEPGTST PPGLVMFLDL LNQAIPHPPQ 300 PETMDLFNMT PEVSHLNTSG YCLQLDAGGN LYYGRLPAPA PVQPHGISTQ ELQDTPQLSL 360 YYPLSSFAGS HTDGTVEFNH QLSNPNGGHY GEEAGPSSVA TGGSANGMDD NDVVQMASNQ 420 FMMPSEDEGI LDLARWIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-42 | 104 | 210 | 3 | 110 | B-MYB |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8GVH9 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g12130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g12130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005197 | 0.0 | AP005197.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0592C06. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645903.1 | 0.0 | transcription factor MYB119 | ||||
TrEMBL | Q8GVH9 | 0.0 | Q8GVH9_ORYSJ; Myb-like protein | ||||
STRING | ORGLA07G0062800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 7e-47 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g12130.1 |
Entrez Gene | 107281580 |