PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g10890.2
Common NameLOC4342706, Os07g0209800, OSNPB_070209800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 342aa    MW: 35320.6 Da    PI: 6.4432
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g10890.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.39.2e-25218280163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+eL++eN+aL++el++lkk ++ +++e+
  LOC_Os07g10890.2 218 ERELKRERRKQSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAEN 280
                       89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.4E-18217277No hitNo description
PfamPF001703.8E-22218280IPR004827Basic-leucine zipper domain
SMARTSM003383.4E-22218282IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.553220283IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-12221276No hitNo description
CDDcd147022.38E-21223273No hitNo description
PROSITE patternPS000360225240IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAAAAV AGTAVATAAA AVPTHAEWAA SLQAYYAAAG HPYAWPAQHL  60
MAAAAAGAPY GAPVPFPMYH PGAAAAYYAH ASMAAGVPYP TAEAMAAAAA AAAGAVPEGK  120
GKGKGAAASP EKGSSAAPSG DDASRSGDSG SEESSDTRDD DTDHKDSSAP KKRKSGNTSA  180
EGIDLWSTPP ALAVPAGQGE ASPGLALARR DGVAHLDERE LKRERRKQSN RESARRSRLR  240
KQQECEELAR KVAELTTENS ALRSELDQLK KACEDMEAEN TRLMGDKAQY KGPTVTTTLG  300
MSIDSSKTQH HDDEGQLHKN TNNNSNGNYV GGSHKPEANS R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234240RRSRLRK
2234241RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.388570.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567657940.0
Expression AtlasA0A0P0X3I8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g10890.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g10890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891790.0AK289179.1 Oryza sativa Japonica Group cDNA, clone: J100028J17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644731.11e-153DNA-binding protein EMBP-1
TrEMBLA0A0P0X3I81e-152A0A0P0X3I8_ORYSJ; Os07g0209800 protein
STRINGOS07T0209800-011e-153(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.14e-19basic region/leucine zipper transcription factor 16