PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g10890.1
Common NameLOC4342706, Os07g0209800, OSNPB_070209800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 389aa    MW: 40075.1 Da    PI: 6.7485
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g10890.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1781.1e-24265327163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+eL++eN+aL++el++lkk ++ +++e+
  LOC_Os07g10890.1 265 ERELKRERRKQSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAEN 327
                       89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165968.3E-8130242No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-17264324No hitNo description
SMARTSM003383.4E-22265329IPR004827Basic-leucine zipper domain
PfamPF001704.7E-22265327IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.553267330IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-12268323No hitNo description
CDDcd147024.21E-22270320No hitNo description
PROSITE patternPS000360272287IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAAAAV AGTAVATAAA AVPTHAEWAA SLQAYYAAAG HPYAWPAQHL  60
MAAAAAGAPY GAPVPFPMYH PGAAAAYYAH ASMAAGVPYP TAEAMAAAAA AAAGAVPEGK  120
GKGKGAAASP EKGSSAAPSG DDASRSGDSG SEESSDTRDD DTDHKDSSAP KKRKSGNTSA  180
EGEPSQATLV PYAAVESPYP LKGRSASKLP VSAPGRAALP NATPNLNIGI DLWSTPPALA  240
VPAGQGEASP GLALARRDGV AHLDERELKR ERRKQSNRES ARRSRLRKQQ ECEELARKVA  300
ELTTENSALR SELDQLKKAC EDMEAENTRL MGDKAQYKGP TVTTTLGMSI DSSKTQHHDD  360
EGQLHKNTNN NSNGNYVGGS HKPEANSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281287RRSRLRK
2281288RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.388570.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567657940.0
Expression AtlasA0A0P0X3I8-
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g10890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g10890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891790.0AK289179.1 Oryza sativa Japonica Group cDNA, clone: J100028J17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644731.10.0DNA-binding protein EMBP-1
SwissprotP250321e-60EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0P0X3I80.0A0A0P0X3I8_ORYSJ; Os07g0209800 protein
STRINGOS07T0209800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Representative plantOGRP1275345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-23basic region/leucine zipper transcription factor 16