PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g10410.1
Common NameLOC107275458, Os07g0204000, OSNPB_070204000, P0431A02.20
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 267aa    MW: 29029.5 Da    PI: 8.395
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g10410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-193989155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  LOC_Os07g10410.1 39 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 89
                      79********.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-193998IPR016177DNA-binding domain
CDDcd000183.22E-333999No hitNo description
PfamPF008472.6E-133989IPR001471AP2/ERF domain
SMARTSM003803.5E-3740103IPR001471AP2/ERF domain
PROSITE profilePS5103219.8754097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-284098IPR001471AP2/ERF domain
PRINTSPR003678.8E-84152IPR001471AP2/ERF domain
PRINTSPR003678.8E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MELQFQKPTQ GQSQQQQCHY QVPTVTVAKN KAKTKCSSSK FVGVRQRPSG RWVAEIKDTT  60
QKIRMWLGTF ETAEEAARAY DEAACLLRGS NTRTNFATQA APDSPLASRI RTILTHKKLK  120
KSMPQPTITF STAVYHHARS TVPAAATSTS TSGVSPSRSN SSSLNFATNL SNFAMSGGEE  180
LQLASSQQQY DQSWALNTSL LPIGDGCDMS GSNACPVASD QDKMKAEKQG SHGMNGIQEQ  240
ETFDMGNDLC DSLWDLPPIC QLSCKY*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XB68
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g10410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g10410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042730.0AP004273.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0431A02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645889.10.0ethylene-responsive transcription factor ERN1
TrEMBLA0A0E0Q5D90.0A0A0E0Q5D9_ORYRU; Uncharacterized protein
TrEMBLQ7XB680.0Q7XB68_ORYSJ; Os07g0204000 protein
STRINGORUFI07G06610.10.0(Oryza rufipogon)
STRINGOS07T0204000-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-27related to AP2 11