PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g09860.1
Common NameOs07g0196800, OsJ_23446, OSNPB_070196800, P0417F02.2, P0589E08.21
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 679aa    MW: 71427.5 Da    PI: 3.7749
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g09860.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.71.3e-2491431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk.... 88 
                       lppG+rF+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L +  +++ ++ +fF++++ k+ +g+r++r +   gyW+ +      
  LOC_Os07g09860.1   9 LPPGLRFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLAD-HGRGDDAFFFAEARAKNGKGSRQKRtVEGGGYWQGQRMcvdg 100
                       79****************************99***************744.4566799******************555599**977654432 PP

               NAM  89 dkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ v          + e  + k +L ++ ++ +kg ++ Wvmhey++
  LOC_Os07g09860.1 101 ERLV--VpdgggggGVEIAWRKYVLSYF-ADGEKG-SSGWVMHEYAI 143
                       3333..2357776333346677778888.556665.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-324162IPR003441NAC domain
PROSITE profilePS5100528.8519162IPR003441NAC domain
PfamPF023653.0E-1510142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MAAAAGDGLP PGLRFEPKDD ELVARFLLAR IQGKPLPLHG VILDADPLCA PPWRLLADHG  60
RGDDAFFFAE ARAKNGKGSR QKRTVEGGGY WQGQRMCVDG ERLVVPDGGG GGGVEIAWRK  120
YVLSYFADGE KGSSGWVMHE YAITSPADLA SSAMRLYRIR FSGHGKKRKR EPDSQSAHDE  180
HGRARCAPQI AMPETALLED SAPPPQPVHP PAAVVDCVCD VTDQGSSLVF PDQPGSIYED  240
ELQSFVPEFA ARNLFVSLPE GSRDVVAEAA LIEDLALSPQ PVPPPAEVVN QADDSDGADQ  300
GCSSVFAALP DLIVLPPEEA CGSGGAAPAP SWASSLDNQN DDAPAFFEFP ESMDDMVGCF  360
DFASMDNQSC TSAVSEIAVL EEPFLPPPTM VNHDNNSVSD GADQSCFGVG DNSTLVFSDL  420
TGSIDEDELQ SFVPEFVSLP QGSCEADAEA DSGGGVAPAQ FAEFGGPESM DDPLNFPAEA  480
SGGGDRAAPA SSWVSSQDNQ NDEAPMFFEL PESLDDMVGC FDFAAMDGQS CTSAVSETAL  540
IEELVLPPAA MVNHHDDSVS DIADHGCSGA VPPPNSEVVD LPNDSVGADQ SCSGMVDDSL  600
SGYYEAELKD ASGGAGSMMS SPDKQKEHSS SGVMDVEATG FGVPDSMDGL SCIDFAETMD  660
DLSCIDFTID DELFDLWS*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6Z394
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g09860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g09860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043790.0AP004379.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0589E08.
GenBankAP0052570.0AP005257.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0417F02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6Z3940.0Q6Z394_ORYSJ; Os07g0196800 protein
STRINGONIVA07G05270.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Representative plantOGRP9888212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-14NAC domain containing protein 47