PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g08600.1
Common NameOJ1046_F10.111, OJ1506_G02.28, Os07g0183700, Os07g0183866, Os07g0183932, OsJ_23349
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 525aa    MW: 56140.3 Da    PI: 6.187
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g08600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-17337433199
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+k lt  dv+k++ +++pk+ a++      +++   ++ l+++d+sg++W ++++++ + ++  +++GW eF +angL +gD  vF+  +r 
  LOC_Os07g08600.1 337 FVKPLTYTDVTKNR-FMVPKDDAAAGvlphiQLN--DDVPLRIKDLSGKEWAFNYTWKAHTRM--FRNGWMEFSNANGLVTGDNAVFM--RRG 422
                       88999999999985.999*****88899966444..6778***************87777655..9**********************..557 PP

                       EE..EEEEE-S CS
                B3  89 efelvvkvfrk 99 
                       ++e+++ v+r+
  LOC_Os07g08600.1 423 NGEMFMAVRRT 433
                       88888888886 PP
2Auxin_resp233.6e-09450517368
        Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsd 68 
                        +a+ +++Fev Y+ r+   eFvv+++ v + l+ ++++Gm + +    ed +  ++  +G v+++++
  LOC_Os07g08600.1 450 WRAARREPFEVSYCLRQDGDEFVVPRDIVDDGLRARFAPGMAVNFVWAVEDGKLPTIgpQGEVISIEN 517
                       5678999***********************************99999999877766666899988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-19334435IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-19335437IPR015300DNA-binding pseudobarrel domain
CDDcd100177.97E-16336428No hitNo description
PROSITE profilePS5086313.493336434IPR003340B3 DNA binding domain
SMARTSM010191.3E-10337434IPR003340B3 DNA binding domain
PfamPF023623.6E-13337432IPR003340B3 DNA binding domain
PfamPF065073.1E-5451518IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MPLPSCRRRE QRPRQSCFQN PECHLRLRAR QQRPQESAVQ STLSSSIYFS DHFVLTPPPF  60
QITPTSIQNS TWLPIPTSPA VAAPPLPRCL GGVDGEGAPC APPPSPIPAG PASSTVSAAS  120
SAPATRDYLG GITGHRLGQE DDSGGHEYTS VSGIHVPSSS GVAFVSFGQC PQEVISTDLC  180
LGLGPIAATA PLQPPPPPAA AAAAGSPSAT TPEPGHGEAT PTTSSSAQFQ TQAQQVTRDM  240
WMACAAPKSG RLPTVGSLVY YFPDGHAEQC LSRPQEPLPG RIFLCKVTDV RLGAAATNEA  300
LATISLVPIA ADDHAFQLQA PADPDPAPAQ SQSLVSFVKP LTYTDVTKNR FMVPKDDAAA  360
GVLPHIQLND DVPLRIKDLS GKEWAFNYTW KAHTRMFRNG WMEFSNANGL VTGDNAVFMR  420
RGNGEMFMAV RRTRNRPAPF SVEEVIEAVW RAARREPFEV SYCLRQDGDE FVVPRDIVDD  480
GLRARFAPGM AVNFVWAVED GKLPTIGPQG EVISIENYAT SIGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A7e-1923652219322Auxin response factor 1
4ldy_B7e-1923652219322Auxin response factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3BH91
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g08600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g08600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882780.10.0B3 domain-containing protein Os07g0183700
SwissprotA3BH910.0Y7838_ORYSJ; B3 domain-containing protein Os07g0183700
TrEMBLA0A0D3GN260.0A0A0D3GN26_9ORYZ; Auxin response factor
STRINGOS07T0183700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2628755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.13e-25auxin response factor 16