PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g08540.1
Common NameOJ1046_F10.105, OJ1506_G02.22, Os07g0183350
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 763aa    MW: 85036.1 Da    PI: 7.0342
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g08540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15.2e-16124222199
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+k+l++sd+  ++r+ +p + a++      + k  ++  l+++d++g  +++ +   ++++r++l+k Wk+F ++ +  +gD+v+F++ + +
  LOC_Os07g08540.1 124 FVKTLMSSDAEYRDRFAVPMDVAKDVfpplvDAKAVQP--LIVKDLQGSPMTFDY--GRNGNRVTLAKVWKKFRDDMDFVDGDSVIFMRRR-D 211
                       89*********************999**9986666676..9**************..*******************************544.8 PP

                       EE..EEEEE-S CS
                B3  89 efelvvkvfrk 99 
                       + el+v+v+r+
  LOC_Os07g08540.1 212 DDELYVGVRRQ 222
                       8889*****97 PP
2B346.85.3e-15442540198
                       EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k lt  d+ k+  r+++pk+ ++     +++ +e++ l ++d +g++W ++++++ +   ++l++GW +F++an+L +gD vvF+++  ++
  LOC_Os07g08540.1 442 FVKPLTCTDAVKNrYRFIVPKRETAMGvlpQLQLNEHVPLYIKDMHGKEWVINYTWKEYT--HMLSSGWIKFANANRLVTGDNVVFMRSM-DS 531
                       56666655555553899******9666999555558888***************776665..99***********************765.44 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       +e +++++r
  LOC_Os07g08540.1 532 GERYMGLRR 540
                       444666655 PP
3Auxin_resp27.31.6e-10558633482
        Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkm..afetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +a+  ++Fev+Y  r+   eFvv++  v++al+ k+++Gm + +  a+e++  ++   +G v++++++       S Wr++
  LOC_Os07g08540.1 558 RAARLEPFEVTYLSRQDGDEFVVPCGIVHNALRAKFTPGMVVNFvwAVEEDRLPNVGPQGKVIAIENY-----ATSIWRMI 633
                       567779**********************************877611555555666666********95.....55888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-17118224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-16119228IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-12122221No hitNo description
SMARTSM010191.8E-9124223IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983124223IPR003340B3 DNA binding domain
PfamPF023624.8E-13124222IPR003340B3 DNA binding domain
SuperFamilySSF1019361.44E-16439539IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-19440541IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-14441540No hitNo description
SMARTSM010199.0E-5442542IPR003340B3 DNA binding domain
PfamPF023623.2E-11442539IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07443542IPR003340B3 DNA binding domain
PfamPF065073.4E-7559633IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MAAAAAALAD DGDGIVDRAM WLACAAPNSG RLPAVGSMVF YFVDGHAEQF CQFPAPLLEQ  60
LAVPGPRVFL CTVAAVRLRA DALTNEAYAD ITLDPVADHD VPRLLPAPAP AAAAGGQQQQ  120
LRYFVKTLMS SDAEYRDRFA VPMDVAKDVF PPLVDAKAVQ PLIVKDLQGS PMTFDYGRNG  180
NRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDELYVGVR RQRTLDKPLR TRRSRPPTPL  240
PVAVQEVIAA AGRAAAGEQF TATYRSRQDG DEFVVPREVV EEGLRLRSRF TPEMEVEFVW  300
ALEDGAPPSV GPHGKITAIH DTTWMWRSVE IGWTGGSEMN KYANFWQVRL VGSDDFASAA  360
PPPPLSPKRL KSSEQCPSRP PEPLPGRVFL CKVTAVRLDA TRNELFATMS LIPVARDQAI  420
QPQAPADPGP SSPQVQTTLV SFVKPLTCTD AVKNRYRFIV PKRETAMGVL PQLQLNEHVP  480
LYIKDMHGKE WVINYTWKEY THMLSSGWIK FANANRLVTG DNVVFMRSMD SGERYMGLRR  540
TLKPEPVSVD EVIEAVWRAA RLEPFEVTYL SRQDGDEFVV PCGIVHNALR AKFTPGMVVN  600
FVWAVEEDRL PNVGPQGKVI AIENYATSIW RMIQVEWPSC AGMNRYVNFW QIREVLGESS  660
FEASTCIVRS QDYSPAPQRN LVNALQLPDG TKQLQQNKKS VSSSSTFRLF GKKMTPGVPP  720
RRDTSGLSGQ VSLFSHYLPH DEDDGQVPTM RQRLETLFPD NI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A6e-2516521352Auxin response factor 1
4ldw_A6e-2516521352Auxin response factor 1
4ldw_B6e-2516521352Auxin response factor 1
4ldx_A7e-2516661363Auxin response factor 1
4ldx_B7e-2516661363Auxin response factor 1
4ldy_A7e-2516521352Auxin response factor 1
4ldy_B7e-2516521352Auxin response factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8H506
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g08540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g08540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882777.10.0B3 domain-containing protein Os07g0183300/Os07g0183600
SwissprotQ8H5060.0Y7833_ORYSJ; B3 domain-containing protein Os07g0183300/Os07g0183600
TrEMBLB9FVV30.0B9FVV3_ORYSJ; Auxin response factor
STRINGOS07T0183350-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.15e-24auxin response factor 19