PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g08520.1
Common NameARF20, OJ1046_F10.103, OJ1506_G02.20, Os07g0183100, OsJ_022407
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 729aa    MW: 79662.2 Da    PI: 7.4993
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g08520.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.95.1e-20120232199
                       EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.......TTHHHHHHHHT--TT- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvlt.......kGWkeFvkangLkegD 78 
                       f+k+l+p+dv++++ lvlp     eh         +++++     ++d++g+++e+ +i++kk++ry+l+       +GW++Fvka++L ++D
  LOC_Os07g08520.1 120 FEKQLSPADVTSNA-LVLPAGA--EHvlppldiaAYQTAR--LFDVRDLRGKRFEFVHIWDKKRCRYMLGdlgvndnDGWRGFVKAKRLATRD 207
                       99***********9.9999774..5659999887666555..78999********************************************** PP

                       EEEEE....E-SSSEE..EEEEE-S CS
                B3  79 fvvFk....ldgrsefelvvkvfrk 99 
                       +vvF+     dg+ ++el+v+v+r+
  LOC_Os07g08520.1 208 TVVFMrrggGDGDGDGELLVGVRRA 232
                       *****7765566799999**99997 PP
2B377.81.1e-24436541199
                       EEEE-..-HHHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                B3   1 ffkvltpsdvlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                       f+k+l+psd+ ++     +++v+pk+ a+eh ++ + + +l++++++g +We+ +++     +++s++++l++GW+ Fvka++L++gD+v+F+
  LOC_Os07g08520.1 436 FDKKLSPSDAAANgggsgALFVIPKPSAAEHVLP-RIP-DLRVTNLQGGRWEFGHTWsdadtDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFM 526
                       899******999988888899**********776.455.9********************99999999************************* PP

                       E-SSSEE..EEEEE-S CS
                B3  84 ldgrsefelvvkvfrk 99 
                       + +r ++e++v+v+rk
  LOC_Os07g08520.1 527 R-RRPGGEPLVGVRRK 541
                       4.44**********98 PP
3Auxin_resp28.75.8e-11255331276
        Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvek.alk..vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpn 76 
                       + a++  ++Fev+Y+Pr +t eFvv+++++   +++   ++ +G+ + ++++    ++ ++sGtv+   +l p r  +
  LOC_Os07g08520.1 255 WLAMQGVTPFEVTYYPREGTFEFVVSRDEYIGfSFSpfYPFVPGTTVHLRMNPLQIAQ-SISGTVRTFDHLRPWRMLE 331
                       66778889********************9875333344999***********998875.569******9999966555 PP
4Auxin_resp609.8e-21558634183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ +as++++F+v+Y+P+++t+eFvv++e+ve +   ++++G+R+++ ++ +d+++r++   +Gtv++v++       +S+Wr+L+
  LOC_Os07g08520.1 558 AWLDASSAQPFRVTYCPWQGTAEFVVRREEVEGSP--PLAPGTRVRLLMNPDDARRRSQppvYGTVRDVHC-------RSEWRMLE 634
                       67889*****************************9..*********************99999******99.......899**995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-21113236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-14115231IPR015300DNA-binding pseudobarrel domain
CDDcd100173.67E-10118211No hitNo description
PROSITE profilePS508638.572119233IPR003340B3 DNA binding domain
PfamPF023628.1E-17120232IPR003340B3 DNA binding domain
SMARTSM010190.0031120233IPR003340B3 DNA binding domain
PfamPF065071.8E-5259334IPR010525Auxin response factor
Gene3DG3DSA:2.40.330.108.2E-19430542IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-15431542IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-12435540No hitNo description
SMARTSM010192.9E-7436542IPR003340B3 DNA binding domain
PROSITE profilePS5086310.715441542IPR003340B3 DNA binding domain
PfamPF023621.2E-14451541IPR003340B3 DNA binding domain
PfamPF065073.0E-7562633IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MAQPPDAAAA AAVPPPVVID RDVWHACAVP YSGVLPGVGT LVYYIPHGHI EQCAEDPALL  60
LSRLPDPIHP VPCTVADLVL DVDAESGEAY ATISLLPGSH DDTTARRQVP AHGEPGFRFF  120
EKQLSPADVT SNALVLPAGA EHVLPPLDIA AYQTARLFDV RDLRGKRFEF VHIWDKKRCR  180
YMLGDLGVND NDGWRGFVKA KRLATRDTVV FMRRGGGDGD GDGELLVGVR RAPRARGGHH  240
PRPGVEDNKV VSEVWLAMQG VTPFEVTYYP REGTFEFVVS RDEYIGFSFS PFYPFVPGTT  300
VHLRMNPLQI AQSISGTVRT FDHLRPWRML EVDWDQAASP ISYRIHRQVN SWQVLRQPQP  360
AATTSAVRIR DAIVATPQVQ IMALPRPPPP TTTTGMVPSD DSYAMISLFP GDCYVTHRPL  420
PAARDPVGGQ REFCFFDKKL SPSDAAANGG GSGALFVIPK PSAAEHVLPR IPDLRVTNLQ  480
GGRWEFGHTW SDADTDRRSS SHTLAAGWSA FVKAKRLCVG DTVIFMRRRP GGEPLVGVRR  540
KPHGGMPVGI PDKHVADAWL DASSAQPFRV TYCPWQGTAE FVVRREEVEG SPPLAPGTRV  600
RLLMNPDDAR RRSQPPVYGT VRDVHCRSEW RMLEVDWDRD SPLAPTMNRR VNSWQVQPVQ  660
LALPPQGSDE EAAAATTSTA HAGDATTSAP SLALQLQTMA SSSSSSAPII PSRGSAFRIV  720
NPRDGSQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-251865750388Auxin response factor 5
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3BH85
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g08520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g08520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882775.10.0putative auxin response factor 20
SwissprotA3BH850.0ARFT_ORYSJ; Putative auxin response factor 20
TrEMBLA0A0E0HXG90.0A0A0E0HXG9_ORYNI; Auxin response factor
STRINGONIVA07G04100.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169621012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.44e-25auxin response factor 2
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
    Gene, 2007. 394(1-2): p. 13-24
    [PMID:17408882]