PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g08420.1 | ||||||||
Common Name | LOC4342570, OJ1014_E09.42, Os07g0182000, OsJ_23334, OSNPB_070182000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 437aa MW: 46491 Da PI: 4.5868 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.1 | 2.2e-14 | 234 | 289 | 1 | 56 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 ++e+k+ +rk++NRe+ArrsR RK a+++ Lee v L eN++L +l ++++ LOC_Os07g08420.1 234 DEEDKVKKRKESNRESARRSRSRKAARLKDLEEQVSLLRVENSSLLRRLADANQKY 289 579****************************************9998777666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-10 | 234 | 288 | No hit | No description |
SMART | SM00338 | 2.7E-13 | 234 | 298 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.4E-11 | 235 | 289 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.932 | 236 | 288 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-8 | 238 | 288 | No hit | No description |
Pfam | PF12498 | 1.5E-26 | 305 | 410 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MEHVFAVDEI PDPLWAPPPP VQPAAAAGVD DVGAVSGGGL LERCPSGWNL ERFLEELDGV 60 PAPAASPDGA AIYPSPMPAA AAEAAARWSR GYGDREAVGV MPMPAAALPA APASAAMDPV 120 EYNAMLKRKL DEDLATVAMW RASGAIHSES PLGNKTSLSI VGSILSSQKC IEGNGILVQT 180 KLSPGPNGGS GPYVNQNTDA HAKQATSGSS REPSPSEDDD MEGDAEAMGN MILDEEDKVK 240 KRKESNRESA RRSRSRKAAR LKDLEEQVSL LRVENSSLLR RLADANQKYS AAAIDNRVLM 300 ADIEALRAKV RMAEESVKMV TGARQLHQAI PDMQSPLNVN SDASVPIQNN NPMNYFSNAN 360 NAGVNSFMHQ VSPAFQIVDS VEKIDPTDPV QLQQQQMASL QHLQNRACGG GASSNEYTAW 420 GSSLMDANEL VNMELQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.1501 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116011359 | 0.0 | ||||
Expression Atlas | Q6ZLB0 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds from 5 to 20 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in seeds. Expressed in aleurone and subaleurone layers of maturing seeds, but not in the embryo tissues. {ECO:0000269|PubMed:11133985}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. Involved in the endosperm-specific regulation of storage protein genes (PubMed:15685292). Can activate the expression of genes encoding for the seed storage proteins glutelin, prolamin, globulin and the allergen RAG1. Functions synergistically with DOF3/RPBF to positively regulate quantitatively many seed storage protein genes (PubMed:16798940, PubMed:19473328). Functions synergistically with DOF3/RPBF to positively regulate some metabolic enzymes, such as alanine aminotransferase and pyruvate phosphate dikinase, that are expressed in developing seeds (PubMed:16798940). Functions synergistically with DOF3/RPBF to positively regulate genes that are key players in the development of aleurone layers (PubMed:19473328). Functions synergistically with DOF3/RPBF to positively regulate the glutelin GLUD-1 gene in endosperm of developing seeds (PubMed:18980953). Can activate the expression of the bifunctional lysine-degrading enzyme, lysine ketoglutarate reductase/saccharopine dehydrogenase (LKR/SDH), one of the key regulators determining free lysine content in plants (PubMed:21037241). Functions as a key regulator of starch synthesis in seeds, by direct binding to the promoters of starch-synthesizing genes, such as AGPL3, WAXXY and SBE1 (PubMed:23846875). {ECO:0000269|PubMed:15685292, ECO:0000269|PubMed:16798940, ECO:0000269|PubMed:18980953, ECO:0000269|PubMed:19473328, ECO:0000269|PubMed:21037241, ECO:0000269|PubMed:23846875}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g08420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g08420 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB053472 | 0.0 | AB053472.1 Oryza sativa mRNA for RISBZ1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645416.1 | 0.0 | bZIP transcription factor RISBZ1-like isoform X1 | ||||
Swissprot | Q6ZLB0 | 0.0 | RSBZ1_ORYSJ; bZIP transcription factor RISBZ1 | ||||
TrEMBL | A0A0D3GN10 | 0.0 | A0A0D3GN10_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1Q8K1 | 0.0 | I1Q8K1_ORYGL; Uncharacterized protein | ||||
STRING | OS07T0182000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3488 | 38 | 78 | Representative plant | OGRP1839 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54620.1 | 2e-21 | basic leucine zipper 25 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g08420.1 |
Entrez Gene | 4342570 |