PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g07974.1 | ||||||||
Common Name | LOC4342538, Os07g0176200, OSNPB_070176200, P0534H07.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CPP | ||||||||
Protein Properties | Length: 783aa MW: 84168.7 Da PI: 6.4986 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.2 | 5e-16 | 466 | 504 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk LOC_Os07g07974.1 466 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 504 589**********************************96 PP | |||||||
2 | TCR | 50.9 | 3.1e-16 | 552 | 591 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ LOC_Os07g07974.1 552 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCEGCKNTF 591 589***********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.8E-17 | 465 | 506 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.33 | 466 | 592 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.8E-12 | 468 | 503 | IPR005172 | CRC domain |
SMART | SM01114 | 1.7E-17 | 552 | 593 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.1E-12 | 554 | 590 | IPR005172 | CRC domain |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 783 aa Download sequence Send to blast |
MDTPDRAAAA ARAEDSPLFS FIDSLSPIEP LKSAYSASSI QAYQSLNITS ISSIFTSPHD 60 NAQKESKLSK SSFAEFSESE VCADESDKNK PSKSSNAVRL FACTSTLTQA THKITSSVSE 120 GTVGPPEGSN DLPQPGQFDS GSPDHNTTPC HGVRSDLKQG KCRKLQAFQT AKTNTSEKRK 180 CLFSTEVQLM DGCQPEKLND EILGCDWDDL ISATSGELIA YDEDHKGVQL AVSNAESCGF 240 LLSKLTGDGD ISDRTHPSSS TQTYYRELLM DEDQTENAQL VPDGEKNIST EEIQDNLYEA 300 NGSIPTGYKV ETQQQRGMRR RCLVFEAAGY SNRIVQKESV MDLSVSTCKG KSPVQNHSNP 360 GKTPSPRVLR GIGLHLNALA LTSKDKMICQ DPMSSLVPSS ATQQEAHGKM LSAGENFIHP 420 GGELLELQMD DDCSAGVFLG NDHDSSQSNS PQKKRRKSDN GDDGEACKRC SCKKSKCLKL 480 YCECFAAGVY CSEPCSCQGC LNKPIHEEIV LSTRKQIEFR NPLAFAPKVI RMSDAGQDIT 540 GEDPNNTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSS NCRCEGCKNT FGKRDAAVST 600 EAEEMKQGGE EAENCGKEKE NDLQKANAQS EDHPFLELVP ITPPFDVSSS LLKPPNFSSA 660 KPPRPTKARS NSSRSSSKAP GAVHSQKFSK IANSGLNEEM PDILRDDASP GNCVKTSSPN 720 GKRVSPPHNA LSVSPSRKGG RKLILKSIPS FPSLIGDASS GSSMNSSESA FNTASPLALG 780 PS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-16 | 468 | 589 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-16 | 468 | 589 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 452 | 456 | KKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.73461 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32975915 | 0.0 | ||||
Expression Atlas | Q6ZEZ8 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g07974.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g07974 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065897 | 0.0 | AK065897.1 Oryza sativa Japonica Group cDNA clone:J013048O08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646690.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | Q6ZEZ8 | 0.0 | Q6ZEZ8_ORYSJ; Os07g0176200 protein | ||||
STRING | OS07T0176200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 | Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 5e-84 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g07974.1 |
Entrez Gene | 4342538 |