PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g06470.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YA | ||||||||
Protein Properties | Length: 358aa MW: 37607.9 Da PI: 8.8906 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 93.9 | 1.8e-29 | 197 | 251 | 3 | 58 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQ+++I++RR +Rak+e+e+++ ++srkpylheSRh+hA+rR+RgsgGrF LOC_Os07g06470.2 197 PIYVNAKQFNGIIRRRLARAKAEREHRV-SRSRKPYLHESRHRHAMRRARGSGGRF 251 9***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.0E-32 | 193 | 254 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.417 | 194 | 254 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.4E-22 | 197 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.5E-30 | 197 | 251 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 199 | 219 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.4E-22 | 228 | 251 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MRSAALSFQD HGHGLQAITG RGGNGGAAAH ALPWWAGAGA GAGSQTLLGT GGGEESFCQL 60 SNTIMEDTRI LQNHHHQILA AGRQLQQRHH FPAMPPERHH HPPPPAPGSP AMKFPIISGD 120 SDLGKDLKFH ESSAPTIAAY SPLQEYQGHF ELALGHSMVC TNFCNSEQSY GVYSPYGAQT 180 MAGRMLLPPA IATDVGPIYV NAKQFNGIIR RRLARAKAER EHRVSRSRKP YLHESRHRHA 240 MRRARGSGGR FLNTKNASSA AAAAADAAPV SSGGGDHGAS NKSSSASEAT RVYDDDDDMG 300 AGGGGDGGDF HHAMGHLRSP AFFPSLAAMM DGGGGGGEGK WATATPHHGC RVDLLKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 1e-17 | 196 | 253 | 3 | 61 | HAPB protein |
4g92_A | 1e-17 | 196 | 253 | 3 | 61 | HAPB protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 244 | RHRHAMRRAR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g06470.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g06470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005454 | 0.0 | AP005454.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645550.1 | 0.0 | nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | B8B7E0 | 0.0 | B8B7E0_ORYSI; Uncharacterized protein | ||||
STRING | OS07T0158500-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14663 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 1e-25 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g06470.2 |