PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g06470.1 | ||||||||
Common Name | Os07g0158500, OSNPB_070158500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YA | ||||||||
Protein Properties | Length: 294aa MW: 31389 Da PI: 9.3467 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 94.4 | 1.3e-29 | 133 | 187 | 3 | 58 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQ+++I++RR +Rak+e+e+++ ++srkpylheSRh+hA+rR+RgsgGrF LOC_Os07g06470.1 133 PIYVNAKQFNGIIRRRLARAKAEREHRV-SRSRKPYLHESRHRHAMRRARGSGGRF 187 9***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.0E-32 | 129 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.417 | 130 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.8E-30 | 133 | 187 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.2E-22 | 133 | 155 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 135 | 155 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.2E-22 | 164 | 187 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEDTRILQNH HHQILAAGRQ LQQRHHFPAM PPERHHHPPP PAPGSPAMKF PIISGDSDLG 60 KDLKFHESSA PTIAAYSPLQ EYQGHFELAL GHSMVCTNFC NSEQSYGVYS PYGAQTMAGR 120 MLLPPAIATD VGPIYVNAKQ FNGIIRRRLA RAKAEREHRV SRSRKPYLHE SRHRHAMRRA 180 RGSGGRFLNT KNASSAAAAA ADAAPVSSGG GDHGASNKSS SASEATRVYD DDDDMGAGGG 240 GDGGDFHHAM GHLRSPAFFP SLAAMMDGGG GGGEGKWATA TPHHGCRVDL LKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 1e-17 | 133 | 189 | 4 | 61 | HAPB protein |
4g92_A | 1e-17 | 133 | 189 | 4 | 61 | HAPB protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 180 | RHRHAMRRAR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A0A0N7KMY8 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g06470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g06470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005454 | 0.0 | AP005454.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645550.1 | 0.0 | nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A0N7KMY8 | 0.0 | A0A0N7KMY8_ORYSJ; Os07g0158500 protein (Fragment) | ||||
TrEMBL | B0S4T5 | 0.0 | B0S4T5_ORYSJ; HAP2 subunit of HAP complex | ||||
TrEMBL | B8B7E0 | 0.0 | B8B7E0_ORYSI; Uncharacterized protein | ||||
STRING | OS07T0158500-00 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 4e-26 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g06470.1 |