PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g05720.1
Common NameLOC4342416, Os07g0152000, OsJ_23121, OSNPB_070152000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 446aa    MW: 47256.3 Da    PI: 9.4979
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g05720.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.85.6e-40591982132
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec.........eaesss 79 
                        g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++      + ++as++               
  LOC_Os07g05720.1  59 SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdtasfpT-NPASSAavaaaaappL----- 145
                       689*************************************************************7776642.2222222221122222..... PP

               TCP  80 ssasnsssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmri 132
                               +       ++ +++ +s+ s++s+ s+l+l++ esr kar+rarer++   + 
  LOC_Os07g05720.1 146 --------PhaereqqQQLTKSGCSSTSETSKGSVLSLSRsESRVKARERARERSSAAAAA 198
                       ........0222223356777779999**************************99877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-4060194IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18961119IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.408178195IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MELAGSNNKR GRVRGPNDDD DDAGEPDAKR HHHQLLLPWP QQQQQQHPAS RIYRVSRASG  60
GKDRHSKVYT AKGIRDRRVR LSVSTAIQFY DLQDRLGYDQ PSKAIEWLIK AAAAAIDKLP  120
SLDTASFPTN PASSAAVAAA AAPPLPHAER EQQQQLTKSG CSSTSETSKG SVLSLSRSES  180
RVKARERARE RSSAAAAAAS KDAGDDAATP TAPTAAPASS QAASFTELLT GMAAANASPA  240
DHKQQQAWQP MTVAAATADY IGFAAAAAPH TQPRKSAAGH HSAMPHTFAS PAPHLANITP  300
IAMAPAQHFT LTPAAAEHHA EMTHYSFDHF MPVHAAAAAA AAASTPAGGD YNLNFSMSSG  360
LVGVHSRGTL QSNSQSHLSS HHHHHHQQQQ QQQQLQRLSA PLDAPNIPFL FSPAAAPTAA  420
DTQFAAALQL WDGFRHADIK EKGKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-3166120155Putative transcription factor PCF6
5zkt_B4e-3166120155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.585840.0flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976067480.0
Expression AtlasQ0D8K4-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g05720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g05720
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037040.0AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10.
GenBankAP0061630.0AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644886.10.0transcription factor PCF6
TrEMBLA2YI860.0A2YI86_ORYSI; Uncharacterized protein
TrEMBLQ0D8K40.0Q0D8K4_ORYSJ; Os07g0152000 protein
STRINGOS07T0152000-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2