PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g04700.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 969aa    MW: 106868 Da    PI: 8.6391
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g04700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.7e-08290382147
                       TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwqky 47 
                       +++W+  E e+l++++kq   +                                              +W++Ia++   gR++ +c srw+++
  LOC_Os07g04700.1 290 KQPWSDVEKEKLAKGIKQQYQEalilnsinkgsstgdfsavdmayaltntagnfevtpeslrsvlpliNWDKIAAMYLPGRSGAECESRWLNF 382
                       79****************99999***************************************************99888************97 PP
2Myb_DNA-binding29.41.8e-09390434246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++WT+ E+++l+  v+q G+++W  Ia t+g++Rt+ qc  r+q 
  LOC_Os07g04700.1 390 NAWTAREEKRLILTVQQQGMNNWINIAVTLGTHRTPFQCLVRYQR 434
                       68**************************************99995 PP
3Myb_DNA-binding43.47.9e-14444487348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        W +eEd++l  av+ +G++ W ++++ m  gRt++qc +rw+k l
  LOC_Os07g04700.1 444 DWAEEEDLQLQAAVNTFGTN-WQLVSASMD-GRTGNQCSNRWRKTL 487
                       6*****************99.*********.************975 PP
4Myb_DNA-binding513.3e-16495540248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       grW+ +Ed++l  avk++G+g+W++Ia+ ++ gRt  qc +rw+++l
  LOC_Os07g04700.1 495 GRWSLDEDKRLMVAVKLFGSGSWNKIAQFIP-GRTQSQCNERWRNVL 540
                       8******************************.************986 PP
5Myb_DNA-binding31.44.3e-10547591247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqcksrwqky 47 
                       g W +eEd +l+  v ++G+  W++Ia ++++ +Rt+++c  rw+k+
  LOC_Os07g04700.1 547 GEWRPEEDSILLASVDEFGPC-WSKIAgAKIP-HRTDNMCLRRWRKL 591
                       68*****************88.****945777.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.377285383IPR017877Myb-like domain
SMARTSM007179.8E-6289385IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-11291308IPR009057Homeodomain-like
CDDcd001670.0011354382No hitNo description
Gene3DG3DSA:1.10.10.603.2E-11355396IPR009057Homeodomain-like
PROSITE profilePS500908.502384436IPR017877Myb-like domain
SMARTSM007170.0017388438IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-21389483IPR009057Homeodomain-like
PfamPF002497.0E-6390434IPR001005SANT/Myb domain
CDDcd001671.28E-4391436No hitNo description
Gene3DG3DSA:1.10.10.601.5E-10397447IPR009057Homeodomain-like
PROSITE profilePS5129410.432437487IPR017930Myb domain
SMARTSM007171.2E-11441489IPR001005SANT/Myb domain
PfamPF002493.6E-12444486IPR001005SANT/Myb domain
CDDcd001672.47E-9445487No hitNo description
Gene3DG3DSA:1.10.10.602.6E-14448490IPR009057Homeodomain-like
PROSITE profilePS5129419.971488544IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-18491542IPR009057Homeodomain-like
SMARTSM007173.0E-12493542IPR001005SANT/Myb domain
SuperFamilySSF466896.34E-26493588IPR009057Homeodomain-like
PfamPF002492.9E-15495540IPR001005SANT/Myb domain
CDDcd001671.70E-11496540No hitNo description
Gene3DG3DSA:1.10.10.603.9E-15543596IPR009057Homeodomain-like
SMARTSM007171.9E-8545594IPR001005SANT/Myb domain
PfamPF002493.3E-8547591IPR001005SANT/Myb domain
PROSITE profilePS5129413.267547596IPR017930Myb domain
CDDcd001676.35E-9548591No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MDFYSDDSDP DIDEDLQRDL DALRQSCILS GNDPDAAVAQ VSACLAAPPA AAAGAEVNGL  60
SDDDDEEEDE DLALVRSIRE NLLLNKASPS SPLPRPICAW PPSDSEDDED DLETLRAIQR  120
RFSHYHSGTS SGSEMNTKTE ASKEGSGNIF GNELDEEFDA EKHNKEATTR TGFPKAALLL  180
VDALKKNRAC QKFIRRKMIT IEAKIEENKD LRDRVKCLLD YQLSCRKAFG KILCQKEDPR  240
VRLISSRKPC AQSTKNKDKK TPALFLGPAD NPHVSKYKMV LKQLPMSLQK QPWSDVEKEK  300
LAKGIKQQYQ EALILNSINK GSSTGDFSAV DMAYALTNTA GNFEVTPESL RSVLPLINWD  360
KIAAMYLPGR SGAECESRWL NFDDPLISHN AWTAREEKRL ILTVQQQGMN NWINIAVTLG  420
THRTPFQCLV RYQRSLNHCI LNKDWAEEED LQLQAAVNTF GTNWQLVSAS MDGRTGNQCS  480
NRWRKTLNPE RSRVGRWSLD EDKRLMVAVK LFGSGSWNKI AQFIPGRTQS QCNERWRNVL  540
DPDIDLGEWR PEEDSILLAS VDEFGPCWSK IAGAKIPHRT DNMCLRRWRK LCQDKLPSVK  600
AAQQIKKSIL QCNFVDRETE RPAIGPSDLM PLVRSKVDGS DENTVSAKVR KPRKRSRIPC  660
EDNVLPGDTS NSSPSMNLPL SESIDAEAAV NTTTANSKKK PSRSRSKKQT DENLAVCDVN  720
NSSNCSSGAR KRKRSITDKN QVVQKKMKGS ISGDNEAVVE TVGTISADNE VATKRKTGST  780
SVGEEGTTKK TTRGSLSGKG EVNKRMRGSI SGVQKGATKQ RMRGSVSTDN HGAVMKSKRA  840
PSRKSAEENS KADSMANAAF GSDLPTVASE DRDANNGNVK NGRLKSMPRP KQINMTEGSA  900
DKFSTSTRLA DCMSFGRING SSRVARHLCV SVKPLSNMIQ SNGPSDVSAK DPTSAETDPT  960
SVENSNTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-253615968159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-253615968159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.492020.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329754700.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g04700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g04700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654520.0AK065452.1 Oryza sativa Japonica Group cDNA clone:J013025M19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883083.10.0myb-like protein L
TrEMBLA2YI130.0A2YI13_ORYSI; Uncharacterized protein
STRINGORUFI07G02320.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65943543
Representative plantOGRP73551617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-147myb domain protein 4r1