PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g04650.1
Common NameOJ1417_E01.115, Os07g0139000, OsJ_022129, P0495H05.55
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 497aa    MW: 51701.7 Da    PI: 4.5402
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g04650.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.7e-08379405227
                       -S---SGGGGTS.--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartG.tCkyGdrCkFaHgp 27 
                       kt+lC  ++  G  C++G++Ck+aHg+
  LOC_Os07g04650.1 379 KTKLCAEYYSRGlGCPRGNTCKYAHGE 405
                       7999988888888************96 PP
2zf-CCCH26.31.2e-08440466127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ykt+lC++f  +G C + ++C+FaHg+
  LOC_Os07g04650.1 440 YKTKLCKTFTSGGLCLFAANCRFAHGE 466
                       9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-6376410IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479377406IPR000571Zinc finger, CCCH-type
SMARTSM003560.018377405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-10379409IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6379405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-12438469IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-8439469IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202439467IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6439466IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-5440466IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774469496IPR000571Zinc finger, CCCH-type
SMARTSM003560.45470496IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5470495IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MADSEDGDHV ATTTTEQRYD DDGHLVPSSG GQEEEGSGGR DVVVPGGHVA EDYRSGVGVP  60
VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSGSMGA GTSATRRLPA  120
TGFGALPTSS MAEDSADHAD DDHLAEEEEE EEEEHYIDDG PLVPSSGGQE EEGSGGRHVF  180
VPGGHDGEED HPDDLVADLD LDLLVDGVVG PVPGGHLNAD APAFVPTTRG RQDLYSALSS  240
SAPAAGYRYR HYITSSALAE AGHVSPFLGL PYATAFDSPL DRELVGPSSA PPPCSAASRA  300
WLVRCSSPLS DSEWTRRSIL AREAAHTPAS TVTGRGRFEF VPIPGAPYAP PPSFAPIAAG  360
AGPAARPLQQ LAFGLEEHKT KLCAEYYSRG LGCPRGNTCK YAHGEDDLRL VVAVSSLADA  420
GEGSSSSDSS FAALGGEDKY KTKLCKTFTS GGLCLFAANC RFAHGEVELG KKEPCWYFFS  480
GQTCPRGDTC GFRHSY*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8GVZ8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g04650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g04650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882954.10.0putative zinc finger CCCH domain-containing protein 48
SwissprotQ8GVZ80.0C3H48_ORYSJ; Putative zinc finger CCCH domain-containing protein 48
TrEMBLA0A0E0H3Z70.0A0A0E0H3Z7_ORYNI; Uncharacterized protein
STRINGOS07T0139000-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173811111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-08C3H family protein
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]