PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g04560.1
Common NameOJ1417_E01.102, OsJ_23027, P0495H05.42
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 344aa    MW: 37925.3 Da    PI: 4.8438
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g04560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.87.6e-48321622128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        pGfrFhPtdeelv++yL++k+++k+l++ e+ike+diyk++P+d+  +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++
  LOC_Os07g04560.1  32 LPGFRFHPTDEELVTFYLRRKIAEKRLSI-EIIKEMDIYKHDPSDFLkTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIC 123
                       69***************************.89*************96345556789************************************* PP

               NAM  94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+    +g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  LOC_Os07g04560.1 124 SAagggGGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 162
                       *988877777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5231195IPR003441NAC domain
PROSITE profilePS5100551.23131195IPR003441NAC domain
PfamPF023657.0E-2533162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MKRGCEDELG AGDVILRGVE EVEEEDDDDL VLPGFRFHPT DEELVTFYLR RKIAEKRLSI  60
EIIKEMDIYK HDPSDFLKTS TVGSEKEWYF FCLRGRKYRN SIRPNRVTGS GFWKATGIDR  120
PICSAAGGGG GDCIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPPPPADDL AAGRSSPPPS  180
LQEAEVWTIC RIFQRNITHK KQPQPQLAVA AAAVPAPVPD ATSSITGSLE SDSAGDDVVE  240
YMNTLQPPPA SNVNGGYSNQ RYFQEQWNSS SNDNTTVFHQ HAAAAPPPEP SPATAMAGFG  300
HDQSVLSSPA PSDFYYKDGC NDDIYRMVME LADPSLFYDH IYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-433320119171NO APICAL MERISTEM PROTEIN
1ut4_B5e-433320119171NO APICAL MERISTEM PROTEIN
1ut7_A5e-433320119171NO APICAL MERISTEM PROTEIN
1ut7_B5e-433320119171NO APICAL MERISTEM PROTEIN
3swm_A6e-433320122174NAC domain-containing protein 19
3swm_B6e-433320122174NAC domain-containing protein 19
3swm_C6e-433320122174NAC domain-containing protein 19
3swm_D6e-433320122174NAC domain-containing protein 19
3swp_A6e-433320122174NAC domain-containing protein 19
3swp_B6e-433320122174NAC domain-containing protein 19
3swp_C6e-433320122174NAC domain-containing protein 19
3swp_D6e-433320122174NAC domain-containing protein 19
4dul_A5e-433320119171NAC domain-containing protein 19
4dul_B5e-433320119171NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8GW08
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g04560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g04560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646514.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK551e-78NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLQ8GW080.0Q8GW08_ORYSJ; Putative development regulation gene OsNAC4 protein
STRINGONIVA03G11770.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-73NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]