PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g03250.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 315aa    MW: 33837.8 Da    PI: 7.2309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g03250.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.2e-1563112355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  LOC_Os07g03250.1  63 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 112
                       9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.256126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-5227IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-5227IPR016177DNA-binding domain
CDDcd000188.78E-2461122No hitNo description
SuperFamilySSF541713.01E-1861121IPR016177DNA-binding domain
PROSITE profilePS5103219.29662120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-1962120IPR001471AP2/ERF domain
SMARTSM003801.9E-3362126IPR001471AP2/ERF domain
PfamPF008471.2E-1063112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEEKAARAYD LAALKYWGPS THINFPLEDY QEELEEMKNM TRQEYVAHLR RKSSGFSRGA  60
SMYRGVTRHH QHGRWQARIG RVSGNKDLYL GTFSTQEEAA EAYDVAAIKF RGLNAVTNFD  120
ITRYDVDKIM ASNTLLPADL ARRNAATTTS KDDHSAAGAG AIVSVHSAAD IAVADTLWKA  180
TTAPRQQQQH HDDVVLSGAD QAAFSVLHDL VAVDAAAAHQ QQQQQQHMSM SAASSLVTSL  240
SNSREGSPDR GGGLSMLFAK PSPAVAASAQ QQASTKLMAA PLPLGSWVSS PPASARPPAV  300
SIAHMPLFAA WTDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.563210.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329950570.0
Expression AtlasB7F2T1-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g03250.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g03250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098480.0AK109848.1 Oryza sativa Japonica Group cDNA clone:002-148-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882595.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X1
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLB7F2T10.0B7F2T1_ORYSJ; cDNA clone:002-148-F05, full insert sequence
STRINGOS07T0124700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.12e-92AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]