PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g02800.2
Common NameLOC4342269, Os07g0119300, OsJ_22904, OSNPB_070119300, P0022B05.109
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 356aa    MW: 38071.9 Da    PI: 6.9224
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g02800.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-32228283156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       k+r++W+p+LH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  LOC_Os07g02800.2 228 KTRRCWSPDLHRKFVAALQQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 283
                       68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7225285IPR017930Myb domain
SuperFamilySSF466892.15E-16226285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-28226284IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-26228283IPR006447Myb domain, plants
PfamPF002497.2E-7230281IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGLDVGEIGV GAADLSLDLK MFAAKSFGRV RGKDTTTTAM GDCIRRLEEE MGKIEVFRRE  60
LPLCVRLLAD VIDVMKEEVE KKGGDRKEDE EDAAGDKSNW MSTAQLWTGN SGGPDAAAAD  120
PEKQDKVRIS SEAKSNGGAF VGSGAPAFAR PKQSLMRKED MAYDVRMPDL SLLSPPASAA  180
AADESRRQVV GFSQAAARAA AMAASGPALS LQPQPQPAAA QQQQQARKTR RCWSPDLHRK  240
FVAALQQLGG PQVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHNRPRVPS STIVNQPIVL  300
MQGLCYIPQE QSSSQSGSPE GPLHFSGSGM AGGGSSAATV SCEEEDGRSE SYGWK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.103330.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329804450.0
Expression AtlasQ7XIF1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g02800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g02800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704210.0AK070421.1 Oryza sativa Japonica Group cDNA clone:J023048M12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644652.10.0myb family transcription factor EFM
TrEMBLQ7XIF10.0Q7XIF1_ORYSJ; Os07g0119300 protein
STRINGOS07T0119300-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-31G2-like family protein