PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g01180.1
Common NameB1026C12.27, LOC107278403
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 288aa    MW: 31108.8 Da    PI: 6.7849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g01180.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156183123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C + F++   L  H+++H
  LOC_Os07g01180.1 61 YTCSFCRREFRSAQALGGHMNVH 83
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-65888No hitNo description
PROSITE profilePS5015711.2196188IPR007087Zinc finger, C2H2
SMARTSM003550.00616183IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-56184IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDAAAMERMA KHYWALWGAG VRSGWPAAAH GGGAEPSWEE KAFAQDAAGH LGGCVWPPRS  60
YTCSFCRREF RSAQALGGHM NVHRRDRARL RQCDDDDDDP IPPTVSICAP PPPPPPPPPL  120
LPAAAAAPDS PSPPSLLLQI SSPKSTTADH HQNHQQLQLQ GTNSSPNSCI ATIIKESRNK  180
ARLFITTMPA PAPATTHDLG LGGGKDDDDS ISISMEEIRR KRRRVDQPLT PTPSYSSERE  240
RRREDDPAAA DASNNKVIPS SSILVNQLAM DMVGRQEIDL ELRLGST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135683229superman protein
2l1o_A2e-135683229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219223RKRRR
2220224KRRRV
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ69L90
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g01180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g01180
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058690.0AP005869.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1026C12.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645557.10.0zinc finger protein 10
TrEMBLQ69L900.0Q69L90_ORYSJ; C2H2-type zinc finger protein-like protein
STRINGONIVA12G09070.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-22C2H2 family protein