PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g51140.1
Common NameLOC4342123, Os06g0727000, OsJ_22720, OSNPB_060727000, P0017G10.15
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 185aa    MW: 20250.6 Da    PI: 7.3771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g51140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.6e-065678123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+Cp C+++F++    + H+r+H
  LOC_Os06g51140.1 56 YPCPLCDRHFPTEKAVHGHMRSH 78
                      99********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-655130No hitNo description
PfamPF139125.7E-65679IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0555683IPR007087Zinc finger, C2H2
SMARTSM003550.00135678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
PfamPF139123.6E-8107131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014108135IPR007087Zinc finger, C2H2
SMARTSM003552.4108130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAGQVFVHHL GGGSGGDDPT HPWLSLKSSH EMDDAVASWR EKLADMAAAD ERAGRYPCPL  60
CDRHFPTEKA VHGHMRSHPG RGWRGMEPPR EPSPGDLALA ADGKRYRYVC DRCKAPFETR  120
QALGGHRASH STKKGCSWHA KQLAMAKPPK NDFDLNHLSL EAIQAAAQEE QAAQEGNKDE  180
EPKN*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329933060.0
Expression AtlasQ5Z7P5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g51140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g51140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080970.0AK108097.1 Oryza sativa Japonica Group cDNA clone:002-139-A09, full insert sequence.
GenBankAP0046850.0AP004685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0017G10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642837.11e-135zinc finger protein ZAT2
TrEMBLA0A0D3GL191e-134A0A0D3GL19_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0Q2V41e-134A0A0E0Q2V4_ORYRU; Uncharacterized protein
TrEMBLI1Q5G21e-134I1Q5G2_ORYGL; Uncharacterized protein
TrEMBLQ5Z7P51e-134Q5Z7P5_ORYSJ; Os06g0727000 protein
STRINGORUFI06G29970.11e-134(Oryza rufipogon)
STRINGOS06T0727000-011e-134(Oryza sativa)
STRINGORGLA06G0237500.11e-134(Oryza glaberrima)
STRINGOBART06G28040.11e-134(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Representative plantOGRP1137324
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.15e-15C2H2-like zinc finger protein