PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g51070.1 | ||||||||
Common Name | LOC4342116, Os06g0726300, OsJ_22714, OSNPB_060726300, P0017G10.6, P0548E04.26 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 32961.4 Da PI: 8.208 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.8 | 1.2e-45 | 20 | 151 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk....rknratksgyWkatgkdk 90 pGfrFhPt+eel+ +yLk+ v+gkkl++ ++i++v++y+++P++Lp ++ +e+ewyfF++rd+k+atg r++r+t++g+Wkatg+d+ LOC_Os06g51070.1 20 LPGFRFHPTEEELLEFYLKQVVQGKKLKF-DIIPTVHLYRHDPRELPGLARIGEREWYFFVPRDRKQATGGggggRPSRTTERGFWKATGSDR 111 59**************************9.99***************8778899**************7555556****************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++ ++l+glkktLv+y+grap+g+ktdWvm+eyrl LOC_Os06g51070.1 112 AIRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 151 ***98777788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-52 | 17 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.203 | 19 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-24 | 21 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MEQQRSRSTA AGGEVEVEQL PGFRFHPTEE ELLEFYLKQV VQGKKLKFDI IPTVHLYRHD 60 PRELPGLARI GEREWYFFVP RDRKQATGGG GGGRPSRTTE RGFWKATGSD RAIRCAADPK 120 RLIGLKKTLV YYEGRAPRGT KTDWVMNEYR LPDAAAIPDT MQLQMQHDDM VLCKVYRKAV 180 SLKELEQRVA MEELARSTTS SGTHNTGSPL QQDSSSISIS SSSDAMKKEV VGVDEASAAA 240 HELVRPATLS LPQLEVARPQ SGLEWMQEPF LTQLRSPWME TWSPYYASVL NF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-45 | 13 | 178 | 9 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.58085 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q5Z7Q4 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g51070.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g51070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003685 | 0.0 | AP003685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0548E04. | |||
GenBank | AP004685 | 0.0 | AP004685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0017G10. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643570.1 | 0.0 | NAC domain-containing protein 22-like | ||||
Swissprot | Q10S65 | 1e-102 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0E0HVR4 | 0.0 | A0A0E0HVR4_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0Q2U6 | 0.0 | A0A0E0Q2U6_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2YH56 | 0.0 | A2YH56_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1Q5F6 | 0.0 | I1Q5F6_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q5Z7Q4 | 0.0 | Q5Z7Q4_ORYSJ; Os06g0726300 protein | ||||
STRING | ORUFI06G29930.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS06T0726300-00 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA06G30950.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA06G0236900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 7e-79 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g51070.1 |
Entrez Gene | 4342116 |
Publications ? help Back to Top | |||
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