PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g50310.1 | ||||||||
Common Name | LOC4342078, Os06g0716800, OsJ_22672, OSNPB_060716800, P0481E08.37, P0541C02.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 273aa MW: 29217.8 Da PI: 6.2206 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26.7 | 1.2e-08 | 98 | 142 | 8 | 52 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r NR A r++R++Kka ++ Lee+v L a N++L k+l++ LOC_Os06g50310.1 98 KRPSGNRAAVRKYREKKKAHTASLEEEVVHLRALNQQLMKKLQNH 142 55566**********************************999975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.3E-13 | 89 | 159 | No hit | No description |
SMART | SM00338 | 2.8E-8 | 89 | 158 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 7.6E-15 | 93 | 148 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.24E-7 | 95 | 142 | No hit | No description |
CDD | cd14686 | 5.14E-12 | 103 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MDDGDLDFSN PDTFLCPAVG GADPDGSCSM DSYFDDILKD TEHHACTHTH TCNPPVHDLS 60 HTHTCVHVHT KIVSAPSDTP SDAAETAESP TENNASKKRP SGNRAAVRKY REKKKAHTAS 120 LEEEVVHLRA LNQQLMKKLQ NHATLEAEVS RLRCLLVDIR GRIEGEIGAF PYQRPVKNID 180 LVSSVDQGSY LGGAQVMNSC DFRCADQMYC SPGMQVRTMG EDGAVSGQVL GQGACDIASI 240 QCQGAKSGSA KLPVCGAMGT MPVGCMPNSE KK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5399 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32981662 | 0.0 | ||||
Expression Atlas | Q5Z8P6 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g50310.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g50310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC091774 | 0.0 | AC091774.7 Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete sequence. | |||
GenBank | AK071639 | 0.0 | AK071639.1 Oryza sativa Japonica Group cDNA clone:J023099K10, full insert sequence. | |||
GenBank | AK103968 | 0.0 | AK103968.1 Oryza sativa Japonica Group cDNA clone:001-016-A09, full insert sequence. | |||
GenBank | AP003614 | 0.0 | AP003614.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0481E08. | |||
GenBank | AP003769 | 0.0 | AP003769.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0541C02. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642505.1 | 0.0 | basic leucine zipper 19 | ||||
Refseq | XP_015642506.1 | 0.0 | basic leucine zipper 19 | ||||
Swissprot | Q8VY76 | 3e-75 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | A0A0D3GKV6 | 0.0 | A0A0D3GKV6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0AEE3 | 0.0 | A0A0E0AEE3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0HVF4 | 0.0 | A0A0E0HVF4_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0Q2P7 | 0.0 | A0A0E0Q2P7_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2YH09 | 0.0 | A2YH09_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1Q5B2 | 0.0 | I1Q5B2_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q5Z8P6 | 0.0 | Q5Z8P6_ORYSJ; Os06g0716800 protein | ||||
STRING | OGLUM06G28970.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI06G29500.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS06T0716800-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA06G30110.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA06G0232500.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART06G27540.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4175 | 35 | 72 | Representative plant | OGRP1970 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35040.1 | 5e-68 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g50310.1 |
Entrez Gene | 4342078 |
Publications ? help Back to Top | |||
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