PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g49880.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | DBB | ||||||||
Protein Properties | Length: 308aa MW: 31786.5 Da PI: 4.9316 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19 | 2.8e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ + +++ C ++ lC C H+ H++ pl LOC_Os06g49880.2 4 QCDVCAAEPAAVLCCADEAALCSACDRRVHRAnrlaskHRRLPL 47 7*****************************76889999988775 PP | |||||||
2 | zf-B_box | 26.4 | 1.4e-08 | 63 | 104 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++ C+ + ek+ fC +++ lC+dC + +H+ Ht LOC_Os06g49880.2 63 APLCDVCREKRGLVFCVEDRAILCADCDEPIHSAndltakHT 104 579*****************************6577777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.267 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.9E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.36E-5 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 4.1E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.556 | 61 | 108 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.2E-17 | 61 | 108 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.90E-7 | 64 | 108 | No hit | No description |
Pfam | PF00643 | 5.6E-6 | 64 | 105 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MRVQCDVCAA EPAAVLCCAD EAALCSACDR RVHRANRLAS KHRRLPLVHP SSSSSGDGGA 60 AAAPLCDVCR EKRGLVFCVE DRAILCADCD EPIHSANDLT AKHTRFLLVG AKLSPAALAE 120 QPLPSSDCSS DDDAAAAATE EEYHSSAAST GAAVSAPLDA SSNGAGGGGG VGGSSISDYL 180 TTICPGWRVE DLLPDDDAFA AAAAAGKEKD ERVPFLDADL FDVVAGRPEK KGGAWAPHVP 240 HLPAWCLDEV PVVVAASAAP AATPVKAKQG HVRDSHWSDS DAFAVPEFSP PPPPAKRARP 300 SSQFWCF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.3396 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991166 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g49880.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g49880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB001884 | 0.0 | AB001884.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R1479. | |||
GenBank | AK105957 | 0.0 | AK105957.1 Oryza sativa Japonica Group cDNA clone:001-205-D08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641371.1 | 0.0 | B-box zinc finger protein 20 isoform X2 | ||||
TrEMBL | A0A0E0E6B0 | 1e-160 | A0A0E0E6B0_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI06G25650.2 | 1e-161 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-39 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g49880.2 |