PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g49880.1
Common NameLOC4342050, OJ1663_H12.37, Os06g0713000, OsJ_22640, OSNPB_060713000, P0712G01.12
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family DBB
Protein Properties Length: 309aa    MW: 31914.7 Da    PI: 4.9316
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g49880.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.9e-06447542
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                       C+ +  +++   C  ++  lC  C    H+       H++ pl
  LOC_Os06g49880.1  4 QCDVCAAEPAAVLCCADEAALCSACDRRVHRAnrlaskHRRLPL 47
                      7*****************************76889999988775 PP
2zf-B_box26.41.4e-0863104338
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                       ++ C+ + ek+   fC +++  lC+dC + +H+       Ht
  LOC_Os06g49880.1  63 APLCDVCREKRGLVFCVEDRAILCADCDEPIHSAndltakHT 104
                       579*****************************6577777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.267147IPR000315B-box-type zinc finger
SMARTSM003366.9E-8147IPR000315B-box-type zinc finger
CDDcd000211.37E-5347No hitNo description
PfamPF006434.1E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501199.55661108IPR000315B-box-type zinc finger
SMARTSM003366.2E-1761108IPR000315B-box-type zinc finger
CDDcd000212.92E-764108No hitNo description
PfamPF006435.7E-664105IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRVQCDVCAA EPAAVLCCAD EAALCSACDR RVHRANRLAS KHRRLPLVHP SSSSSGDGGA  60
AAAPLCDVCR EKRGLVFCVE DRAILCADCD EPIHSANDLT AKHTRFLLVG AKLSPAALAE  120
QPLPSSDCSS DDDAAAAATE EEYHSSAAST GAAVSAPLDA SSNGAGGGGG VGGSSISDYL  180
TTICPGWRVE DLLPDDDAFA AAAAQAGKEK DERVPFLDAD LFDVVAGRPE KKGGAWAPHV  240
PHLPAWCLDE VPVVVAASAA PAATPVKAKQ GHVRDSHWSD SDAFAVPEFS PPPPPAKRAR  300
PSSQFWCF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.33960.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329911660.0
Expression AtlasO82114-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g49880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g49880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018840.0AB001884.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R1479.
GenBankAK1059570.0AK105957.1 Oryza sativa Japonica Group cDNA clone:001-205-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641370.10.0B-box zinc finger protein 20 isoform X1
TrEMBLA0A0E0Q2L20.0A0A0E0Q2L2_ORYRU; Uncharacterized protein
TrEMBLO821140.0O82114_ORYSJ; Os06g0713000 protein
STRINGORUFI06G29210.10.0(Oryza rufipogon)
STRINGOS06T0713000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Representative plantOGRP1271444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.13e-39salt tolerance homolog2
Publications ? help Back to Top
  1. Song J, et al.
    Isolation and mapping of a family of putative zinc-finger protein cDNAs from rice.
    DNA Res., 1998. 5(2): p. 95-101
    [PMID:9679197]