PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os06g48534.1 | ||||||||
Common Name | Os06g0698900, OSNPB_060698900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 293aa MW: 31572 Da PI: 4.6855 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.9 | 2.1e-16 | 209 | 245 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg Tp++Rrgpdg++tLCnaCGl+++ kg+ LOC_Os06g48534.1 209 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANKGM 245 ****977777***********************9996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 5.9E-11 | 73 | 108 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.975 | 73 | 108 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.1E-13 | 76 | 107 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.404 | 134 | 176 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.2E-16 | 134 | 176 | IPR010402 | CCT domain |
SMART | SM00401 | 1.5E-11 | 203 | 256 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.091 | 203 | 251 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-13 | 207 | 266 | No hit | No description |
CDD | cd00202 | 2.56E-14 | 208 | 258 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.9E-16 | 208 | 250 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 6.6E-14 | 209 | 244 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 209 | 236 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MARFEEEHRA LGAEEEYEEE EDELEEEEEE MEEDEDAQHH EGVGGEVAVP MDAEAAAQLD 60 PHGGMLAASG AVQPMASNQL TLSFQGEVYV FDSVSPDKVQ AVLLLLGGRE LNPGLGSGAS 120 SSAPYSKRLN FPHRVASLMR FREKRKERNF DKKIRYSVRK EVALRMQRNR GQFTSSKPKG 180 DEATSELTAS DGSPNWGSVE GRPPSAAECH HCGINAKATP MMRRGPDGPR TLCNACGLMW 240 ANKGMLRDLS KAPPTPIQVV ASVNDGNGSA AAPTTEQEIP APATVNGHES ST* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.74746 | 1e-166 | flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | A0A0P0X0Y6 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os06g48534.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os06g48534 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK243334 | 0.0 | AK243334.1 Oryza sativa Japonica Group cDNA, clone: J100058P16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882282.1 | 0.0 | GATA transcription factor 20 | ||||
Swissprot | Q5Z4U5 | 0.0 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A0P0X0Y6 | 0.0 | A0A0P0X0Y6_ORYSJ; Os06g0698900 protein | ||||
STRING | OS06T0698900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51600.2 | 4e-75 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os06g48534.1 |