PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g45310.1 | ||||||||
Common Name | LOC107276066, Os06g0663500, OsJ_021400, OSJNBb0065C04.42, SPL11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | SBP | ||||||||
Protein Properties | Length: 344aa MW: 37344.3 Da PI: 7.7435 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 116.3 | 1.6e-36 | 66 | 143 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC +l key+r+h+vCe h+k+ v+v+g+ +rfCqqCsrfh+ sefD+ekrsCrrrL++hn+rrrk+q+ LOC_Os06g45310.1 66 RCQVEGCGLELGGYKEYYRKHRVCEPHTKCLRVVVAGQDRRFCQQCSRFHAPSEFDQEKRSCRRRLSDHNARRRKPQT 143 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.7E-29 | 62 | 128 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.872 | 64 | 141 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.16E-36 | 65 | 147 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-28 | 67 | 140 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MECNPVSSTT SSSLLWDWDA TASAEPPPPP GKRGGRDSSS ASASAKRGRS AAAAGDAAAV 60 AAEAPRCQVE GCGLELGGYK EYYRKHRVCE PHTKCLRVVV AGQDRRFCQQ CSRFHAPSEF 120 DQEKRSCRRR LSDHNARRRK PQTDVFAFGS GTLPRSLFDD RQQISFAWDN NAPLNHANTT 180 SSSSWTSDLQ LSQVMDISKR SRKAGADSAN IRLSNALPTL CHDTNELLPI KGADASETAS 240 KLDGALDVQR ALSLLSASSR GLTDPGHQTS SIIQFTNSNQ NSTLPSVPSE GNSNVPFWVD 300 GQHQAVEPQV FQFTMDTGNT VFPDLERIKP SYESSMFGLN QIH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-22 | 67 | 140 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.9149 | 0.0 | vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297725156 | 0.0 | ||||
Expression Atlas | Q653Z5 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g45310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g45310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004744 | 0.0 | AP004744.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641499.1 | 0.0 | squamosa promoter-binding-like protein 11 | ||||
Swissprot | Q653Z5 | 0.0 | SPL11_ORYSJ; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | A0A0E0Q195 | 0.0 | A0A0E0Q195_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G25590.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS06T0663500-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 3e-40 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g45310.1 |
Entrez Gene | 107276066 |
Publications ? help Back to Top | |||
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