PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g44750.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 264aa    MW: 28123.8 Da    PI: 9.3971
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g44750.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-152576155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  LOC_Os06g44750.1 25 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 76
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-102576IPR001471AP2/ERF domain
CDDcd000183.52E-242586No hitNo description
SuperFamilySSF541712.42E-182586IPR016177DNA-binding domain
PROSITE profilePS5103219.0452684IPR001471AP2/ERF domain
SMARTSM003801.5E-332690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-182685IPR001471AP2/ERF domain
PRINTSPR003676.5E-52738IPR001471AP2/ERF domain
PRINTSPR003676.5E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKSMTRQEFI ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ  60
EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV DSILNSDLPV GGGAATRASK FPSDPSLPLP  120
SPAMPPSEKD YWSLLALHYH HHQQQQQQQQ FPASAFDTYG CSSGVNVDFT MGTSSHSGSN  180
SNSSSSSAIW GTAAGAAMGR QQNGGSSNKQ SNSYSGNNIP YAAAAAMTSG SALYGGSTGS  240
NGTWVASNTS TAPHFYNYLF GME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.218910.0callus| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567642880.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g44750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g44750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8588430.0HQ858843.1 Oryza sativa Japonica Group isolate UT1531 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641575.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLB8B0Y90.0B8B0Y9_ORYSI; Uncharacterized protein
STRINGOS06T0657500-020.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-56AINTEGUMENTA-like 5