PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g44010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 397aa MW: 42643.2 Da PI: 9.836 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 5.9e-30 | 250 | 309 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a Cpvkkkv+rsa+d++v++ tYegeHnh LOC_Os06g44010.1 250 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSADDNTVLVATYEGEHNHA 309 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.199 | 245 | 311 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.29E-25 | 249 | 311 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.7E-29 | 249 | 311 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-35 | 250 | 310 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-25 | 251 | 308 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MAKMLPPPSQ SVPSRPPSWL YIPPRRRHGT FTSSCAFRLS PSSPSSPPPP VLDFQYIQFM 60 DSWIEQTSLS LDLNVGLPST ARRSSAPAAP IKVLVEENFL SFKKDHEVEA LEAELRRASE 120 ENKKLTEMLR AVVAKYTELQ GQVNDMMSAA AAAAVNAGNH QSSTSEGGSV SPSRKRIRSV 180 DSLDDAAHHR KPSPPFVAAA AAAAYASPDQ MECTSAAAAA AAKRVVREDC KPKVSKRFVH 240 ADPSDLSLVV KDGYQWRKYG QKVTKDNPCP RAYFRCSFAP ACPVKKKVQR SADDNTVLVA 300 TYEGEHNHAQ PPHHDAGSKT AAAAKHSQHQ PPPSAAAAVV RQQQEQAAAA GPSTEVAARK 360 NLAEQMAATL TRDPGFKAAL VTALSGRILE LSPTKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-21 | 249 | 312 | 13 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50015 | 0.0 | callus| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991491 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00068 | PBM | Transfer from AT2G25000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g44010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g44010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106282 | 0.0 | AK106282.1 Oryza sativa Japonica Group cDNA clone:002-101-A04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641578.1 | 0.0 | WRKY transcription factor WRKY28-like | ||||
Swissprot | Q0DAJ3 | 0.0 | WRK28_ORYSJ; WRKY transcription factor WRKY28 | ||||
TrEMBL | A0A0E0Q0V3 | 0.0 | A0A0E0Q0V3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G24530.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1822 | 38 | 103 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25000.1 | 5e-46 | WRKY DNA-binding protein 60 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g44010.1 |