PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g43870.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 269aa    MW: 27690 Da    PI: 8.765
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g43870.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.74.5e-071672092163
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       R RKk+++ e ++ v +L+ eN+ L++e+  l+  + +l +e+
  LOC_Os06g43870.2 167 RPRKKMRLPEIQQLVRSLTVENDGLREEMVALQRACTALSKEN 209
                       89***********************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-4167206No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTAADAEACA VAAAADIICS LRGADLAGWT PPWGTAAAKG KEVVVEEEEE ELAWPTVARG  60
KRSRSSRRRS PSGSGSAATK GRWARGSPAS PLDYSGGSGS GSGSAASTSG GEDGAFCSPP  120
PPPPPVVTAA AATTPTAAPT PSPAKVGPAG RRQLILPTPP PRPAGQRPRK KMRLPEIQQL  180
VRSLTVENDG LREEMVALQR ACTALSKENC KLETRLEKSS KRNGTKSEGQ QARPQPDEPA  240
AKQESQNGFV LPDLNLPVED MAADGSAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166172RPRKKMR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.59361e-173callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329751611e-173
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g43870.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g43870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035170.0AP003517.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0062J02.
GenBankAP0040080.0AP004008.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1226_A12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644355.10.0uncharacterized protein LOC4341662
TrEMBLA0A0E0Q0T90.0A0A0E0Q0T9_ORYRU; Uncharacterized protein
STRINGORUFI06G24410.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37902951