PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g43860.2 | ||||||||
Common Name | HOS59, LOC4341661, OJ1226_A12.18, Os06g0646600, OSJNBa0062J02.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 318aa MW: 34654.9 Da PI: 6.5766 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.2 | 1.2e-07 | 260 | 293 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + LOC_Os06g43860.2 260 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 293 569*****************************87 PP | |||||||
2 | ELK | 29.3 | 1.9e-10 | 214 | 235 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ LOC_Os06g43860.2 214 ELKHELKQGYREKLVDIREEIL 235 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-19 | 45 | 89 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.5E-16 | 48 | 85 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-25 | 103 | 158 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.6E-17 | 111 | 157 | IPR005541 | KNOX2 |
Pfam | PF03789 | 2.9E-6 | 214 | 235 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.196 | 214 | 234 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0014 | 214 | 235 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.596 | 234 | 297 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-15 | 236 | 301 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.3E-10 | 236 | 301 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.34E-11 | 237 | 298 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 241 | 298 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.4E-18 | 254 | 293 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MAFHYQDHAL AMDAAAAAAE TGGHHHPGFV GAGGVVGGGG GGGWEREKAA IAAHPLYERL 60 LEAHVACLRV ATPVDQLPRI DAQIAARPPP LAAATAAAAA AAAGGAPSGG EELDLFMTHY 120 VLLLCSFKEQ LQQHVRVHAM EAVMACWELE QTLQSLTGAS PREGSGATMS DDEDNQVDSE 180 SNMFDGNDGS DGMGFGPLML TEGERSLVER VRQELKHELK QGYREKLVDI REEILRKRRA 240 GKLPGDTAST LKAWWQAHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPA 300 SSSSDKSKRK RYRVVDF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 290 | 310 | RKRNWHSNPASSSSDKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4608 | 0.0 | flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 14149138 | 0.0 | ||||
Expression Atlas | Q94LW4 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Isoform 2 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 4 is expressed in leaf blades and at lower levels in flowers. {ECO:0000269|PubMed:12034492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g43860.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g43860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB061818 | 0.0 | AB061818.1 Oryza sativa Japonica Group HOS59 mRNA for KNOX family class 2 homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644389.1 | 0.0 | homeobox protein knotted-1-like 11 isoform X1 | ||||
Refseq | XP_015644390.1 | 0.0 | homeobox protein knotted-1-like 11 isoform X2 | ||||
Swissprot | Q94LW4 | 0.0 | KNOSB_ORYSJ; Homeobox protein knotted-1-like 11 | ||||
TrEMBL | A0A0E0Q0T8 | 0.0 | A0A0E0Q0T8_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G24400.2 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-138 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g43860.2 |
Entrez Gene | 4341661 |
Publications ? help Back to Top | |||
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