PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g43220.1 | ||||||||
Common Name | Os06g0639200, OSNPB_060639200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | AP2 | ||||||||
Protein Properties | Length: 335aa MW: 36104.1 Da PI: 6.9249 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.3 | 1.6e-07 | 3 | 33 | 20 | 55 |
AP2 20 rdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 rd + k+++lg f+ta+ Aa+a+++a+ k++g LOC_Os06g43220.1 3 RD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 33 56......45************************997 PP | |||||||
2 | AP2 | 41.1 | 4.6e-13 | 76 | 124 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 s+++GV+ +k g+W+A+I +k+++lg ++t+ eAaka+++a+ k LOC_Os06g43220.1 76 SRFRGVTLHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAKAYDKAAIKC 124 789*******.7******77733....25**********77*********9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.601 | 1 | 41 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-11 | 3 | 47 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-9 | 6 | 42 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-11 | 6 | 41 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.00E-24 | 76 | 136 | No hit | No description |
Pfam | PF00847 | 6.4E-9 | 76 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-17 | 76 | 135 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-32 | 77 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.789 | 77 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-17 | 77 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-5 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-5 | 116 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MCRDCGKQVY LGGFDTAQAA ARAYDQAAIK FRGVEADINF TLDDYKEDIK KMNNFSKEEF 60 VQVLRRQGAG FVRGSSRFRG VTLHKCGKWE ARIGQLMGKK YVYLGLYDTE MEAAKAYDKA 120 AIKCCGKEAV TNFDTQAYED ELNLQSWDSE LDLELSLGCS GGERAAGEVL HSAPSNQRTS 180 LTFMLPEEEE MTACHRQRSI WARPSLAPAM PDGGAVIRPD QHQHHPSSRN MLLMSQVISS 240 SGGGGGSGRQ GAAELHMRPR HGWSSGGNNW APPYAARPRL PGAEDDEDDD SAAAASSGFP 300 MGQVATASSP SRPSSSSCSS RRSSTAAATA TTGR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.74784 | 1e-171 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297725122 | 1e-171 | ||||
Expression Atlas | A0A0N7KMH0 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g43220.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g43220 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242957 | 0.0 | AK242957.1 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642711.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 | ||||
Swissprot | A0A0N7KMH0 | 0.0 | AP24_ORYSJ; APETALA2-like protein 4 | ||||
TrEMBL | A0A0D3GJ31 | 0.0 | A0A0D3GJ31_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0Q0M5 | 0.0 | A0A0E0Q0M5_ORYRU; Uncharacterized protein | ||||
STRING | OS06T0639200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11821 | 34 | 39 | Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-69 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g43220.1 |
Publications ? help Back to Top | |||
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