PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g42690.1
Common NameOsJ_22063, P0505A04.33
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 175aa    MW: 18035.7 Da    PI: 8.5263
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g42690.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.52.6e-1268128363
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       + ++err+++NRe+ArrsR R++ +++eL   v+eL a N++L+ el++     a++  e+
  LOC_Os06g42690.1  68 DERKERRLASNRESARRSRVRRRRQLDELSSHVAELRAANHRLAVELNRAAARHAQMAREN 128
                       6689********************************************9998888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-766130IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-866116No hitNo description
PROSITE profilePS5021710.62268131IPR004827Basic-leucine zipper domain
PfamPF001701.5E-969128IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.18E-770118No hitNo description
PROSITE patternPS0003607388IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAYQSFGAVD LAASFFFSSS SSSPQPGLVG VHGDRFLGGG GGDGGDGGSS YDGGGDGGAA  60
SGKGTRRDER KERRLASNRE SARRSRVRRR RQLDELSSHV AELRAANHRL AVELNRAAAR  120
HAQMARENAR LAEEARALRE RLPLRGGGGG GGDGEAEEEA GGGCGAEAIL APMD*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ67VL2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g42690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g42690
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047920.0AP004792.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0505A04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ67VL21e-114Q67VL2_ORYSJ; Uncharacterized protein
STRINGONIVA06G25700.14e-53(Oryza nivara)
STRINGORGLA06G0181100.14e-53(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2048088