PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g42630.1
Common NameOs06g0632500, P0505A04.21
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 394aa    MW: 43751.3 Da    PI: 9.7902
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g42630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-11241181395
                       TT-EE--HHH.HTT.............---.....--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3  13 sgrlvlpkkfaeeh.............ggkke...esktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 
                       ++rl++p +fa++              +   e   +   + +  + g++W+v+l+  +++ +    +l++GW+e + a+gL eg  vv++l++
  LOC_Os06g42630.1  24 LHRLSVPGEFAARLddddaagvgeeeeE---EsgrRAAAVLVVGPLGKVWRVELR--RSPAGdgeAWLGGGWSELAAAHGLGEGWGVVLRLER 111
                       589********99999999998765442...1444677899999**********5..54444447*************************998 PP

                       SSEE..EEE CS
                B3  87 rsefelvvk 95 
                       r  +   ++
  LOC_Os06g42630.1 112 RGVA--SLR 118
                       7666..444 PP
2B343.75.1e-14146235397
                       EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       k l ++d      + +p kf+++h  +  +++++  ++  + g+ W+v+l  ++ +  ++l++GW  F  a++L eg +++F+++g++ f  +
  LOC_Os06g42630.1 146 KLLQQEDL---EKMKIPEKFVQQHltETYTNNHQNAIIVCPLGKFWRVEL--QREQPDVLLRDGWAPFLAAHDLSEGNILLFRYEGNMVF--T 231
                       55533333...3478**********944445667899999**********..999999****************************9999..6 PP

                       EEEE CS
                B3  94 vkvf 97 
                       v vf
  LOC_Os06g42630.1 232 VEVF 235
                       6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1310123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1112125IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.3E-614123IPR003340B3 DNA binding domain
PfamPF023629.9E-925115IPR003340B3 DNA binding domain
CDDcd100178.88E-1060113No hitNo description
PROSITE profilePS508639.50260123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-20139240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-20140244IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.407141238IPR003340B3 DNA binding domain
CDDcd100172.61E-15142235No hitNo description
SMARTSM010191.0E-6144238IPR003340B3 DNA binding domain
PfamPF023625.6E-11152235IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-9315390IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-8316390IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.754349393IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DAAGVGEEEE EESGRRAAAV  60
LVVGPLGKVW RVELRRSPAG DGEAWLGGGW SELAAAHGLG EGWGVVLRLE RRGVASLRVF  120
DPGFCLARFC TPHAGMRTKD RPRFIKLLQQ EDLEKMKIPE KFVQQHLTET YTNNHQNAII  180
VCPLGKFWRV ELQREQPDVL LRDGWAPFLA AHDLSEGNIL LFRYEGNMVF TVEVFLQNGC  240
LKEYKTAALY LTDGTEGPSN APQQSAAKVG VSPVKRKRTR RIEGTCLEGP NRKSRASPIS  300
VKVEPHKKHV SIVSQNSFTK EMTAYSIHSL LSVRGTFCSQ IGLLEACAIT LKISMKKKGS  360
WRVAFKTANT YGYINGPGWR KFCLENELEV QRR*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ67VL7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g42630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g42630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047920.0AP004792.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0505A04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642658.10.0putative B3 domain-containing protein Os06g0632500 isoform X1
SwissprotQ67VL70.0Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A0E0AC580.0A0A0E0AC58_9ORYZ; Uncharacterized protein
STRINGOS06T0632500-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Representative plantOGRP10106410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-12B3 family protein