PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os06g42520.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 999aa MW: 112818 Da PI: 8.3423

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os06g42520.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.6	4.8e-19	240	319	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn YA+ +GF +r+sk++++ + g +++f+C +eg++++ + + tr+gCka++++++++ ++kw+v+ +++eHnHe+ LOC_Os06g42520.1 240 FYNLYARFTGFGIRRSKNRYK-DGGVKSMQEFCCIREGRDNSVT---------GPPTRIGCKAMVRLNRSSeSQKWRVSAFVSEHNHEMK 319 9*************99987.889999******988754.........569**********99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-13	240	318	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-30	442	535	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.237	725	761	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-5	726	757	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.4E-5	736	763	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MATARVVFLL LFLVQIVGVL AAAARPLEEN GVDGIATQML AAEAYILLPG VATPIVTIGH 60 LSNSHQGFGL QLTNGLFLME QKLSGGKGRM SSARSVASPS AARVGGGSSA PDVEQQKSVA 120 AVGASSPVSS SKHHHMAKAE DGTITVNGDK QQNPAADRGS YQNPCWTETI FAKIAMEEEG 180 WPEKGGEDHS GQPMDVVPLE RIVVEGEEDS DLLPISLSDP AILLPKIGQT FNEDSDGYAF 240 YNLYARFTGF GIRRSKNRYK DGGVKSMQEF CCIREGRDNS VTGPPTRIGC KAMVRLNRSS 300 ESQKWRVSAF VSEHNHEMKR DLQHTKHFRS HNFIDEGTKR NIKEMVDNGM TPTAMYGLLS 360 GMHGGPSLTP FTRRAVTRMA YAIRRDECSN DVQKTLNFFR EMQCRSKNFF YTIQIDGASR 420 IKNIFWCHSL SRLSFDHFGD AITFDTTYQT NRYNMPFGIF VGVNNHFQTA IFGCALLREE 480 TIEAFKWLFQ TFTDAMHGKR PVAILTDNCH QMEVAIKAVW PETIHRVCKW HVLKNAKENL 540 GNIYSKRSSF KQEFHRVLNE PQTEAEFEKA WSDLMEQYNL ESSVYLRRMW DMKKKWAPAY 600 FREFFFARMS TTQRSESMNH VLKKYVKPSS SLHGFAKRYE NFYNDRIEAE DAEEHDTYNE 660 KVSTLTSSPI EKHASRVYTR GAFSRFKEQF KLSFSFMVYH TSDQHVLQLV HIGDDTLQSW 720 GSKEFKVQVD LTEQDLSCGC KLFEHLGIIC SHIIRVMVQY GFTEIPKKYI LKRWTKDARD 780 SIPKHLEESY LKDKEAASSR TYRNTLLHKS ALDMVRLGGT SSETYEKTVE VLTKLIGELQ 840 VMCTSQVVNN KEIHYGDRTI GKKPTGVQLD DSVDSSDSEH GMSDEFCVAD EDGIGQDVSA 900 GEDSVDVDMT DVNEEDILPP EVRRSRGRPR STRLMSKGET SSKAKKKKAS ESTSKDESKN 960 HAKGKKESTK QIRYCKQCGG HGHYKSTCGR KSSYERKK*

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MATARVVFLL LFLVQIVGVL AAAARPLEEN GVDGIATQML AAEAYILLPG VATPIVTIGH  60
LSNSHQGFGL QLTNGLFLME QKLSGGKGRM SSARSVASPS AARVGGGSSA PDVEQQKSVA  120
AVGASSPVSS SKHHHMAKAE DGTITVNGDK QQNPAADRGS YQNPCWTETI FAKIAMEEEG  180
WPEKGGEDHS GQPMDVVPLE RIVVEGEEDS DLLPISLSDP AILLPKIGQT FNEDSDGYAF  240
YNLYARFTGF GIRRSKNRYK DGGVKSMQEF CCIREGRDNS VTGPPTRIGC KAMVRLNRSS  300
ESQKWRVSAF VSEHNHEMKR DLQHTKHFRS HNFIDEGTKR NIKEMVDNGM TPTAMYGLLS  360
GMHGGPSLTP FTRRAVTRMA YAIRRDECSN DVQKTLNFFR EMQCRSKNFF YTIQIDGASR  420
IKNIFWCHSL SRLSFDHFGD AITFDTTYQT NRYNMPFGIF VGVNNHFQTA IFGCALLREE  480
TIEAFKWLFQ TFTDAMHGKR PVAILTDNCH QMEVAIKAVW PETIHRVCKW HVLKNAKENL  540
GNIYSKRSSF KQEFHRVLNE PQTEAEFEKA WSDLMEQYNL ESSVYLRRMW DMKKKWAPAY  600
FREFFFARMS TTQRSESMNH VLKKYVKPSS SLHGFAKRYE NFYNDRIEAE DAEEHDTYNE  660
KVSTLTSSPI EKHASRVYTR GAFSRFKEQF KLSFSFMVYH TSDQHVLQLV HIGDDTLQSW  720
GSKEFKVQVD LTEQDLSCGC KLFEHLGIIC SHIIRVMVQY GFTEIPKKYI LKRWTKDARD  780
SIPKHLEESY LKDKEAASSR TYRNTLLHKS ALDMVRLGGT SSETYEKTVE VLTKLIGELQ  840
VMCTSQVVNN KEIHYGDRTI GKKPTGVQLD DSVDSSDSEH GMSDEFCVAD EDGIGQDVSA  900
GEDSVDVDMT DVNEEDILPP EVRRSRGRPR STRLMSKGET SSKAKKKKAS ESTSKDESKN  960
HAKGKKESTK QIRYCKQCGG HGHYKSTCGR KSSYERKK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.12304	0.0	panicle

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os06g42520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os06g42520

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004792	0.0	AP004792.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0505A04.
GenBank	AP007205	0.0	AP007205.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0048L03.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q8H7R4	0.0	Q8H7R4_ORYSJ; Uncharacterized protein OSJNBa0081P02.17

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-117	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os06g42520.1